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Detailed information on CNT30578343


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002304, E-value = 6e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30646316Oryza barthiiCannabis sativa16.0620.7388.6179forward

Expression of CNT30578343

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MSFLHTLSSLVCTREEFPGRSPIPNCLFYTLCPHSCAPGKNFPVGHPSQIAPGQARLTLEFFGDWLPKKKLQLVDMSILLILLSPRSGCYTPN*

>peptide 2 (29 aa)
HHIGIELLYKEILHKTQLKYTKKSSIKLS*

Sequence

>CNT30578343
CCACCACATCGGTATCGAATTATTATACAAAGAAATCCTCCATAAAACTCAGCTAAAATATACAAAGAAATCCTCCATAAAACTCAGCTAAAATATAACC
AAATTTAAGAGCATACTGCCCTCACACACCAACAACATGTCTTTTCTACACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATTTCCCGGTCGGTCAC
CCATCCCAAATTGTCTTTTCTACACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATTTCCCGGTCGGTCACCCATCCCAAATTGCTCCAGGCCAAGC
ACGCTTAACCCTGGAGTTCTTTGGAGATTGGCTCCCGAAAAAGAAGTTGCAACTTGTTGATATGAGTATTCTATTAATCCTATTAAGCCCTAGGTCAGGA
TGTTACACTCCGAACTAGTCCCGAGCGGAACTAGCCCGTGACGCTCCAAAGTAACCTGTTAATCGATACCAGTCCCAGGAAACAGTGCTGGT