Detailed information on CNT30578338


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516799Oryza barthiiJuglans regia23.085.4388.184reverse complement
CNT30164425Oryza barthiiPistacia vera60.9911.9683.33222reverse complement
CNT30193415Oryza barthiiSecale cereale61.2639.6891.93223reverse complement
CNT30221243Oryza barthiiHordeum vulgare77.213.0491.81281forward
CNT30371226Oryza barthiiOryza glumipatula77.298.699.29281forward
CNT30104396Oryza barthiiOryza rufipogon77.226.1693.95281forward

Expression of CNT30578338

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MITPPGLSTCGLIIKPVNFVSPAGTRFLLL

>peptide 2 (35 aa)
MLCYVWCYELQEIKWLTWTAGGLHVPLCRDVRCRW*

>peptide 3 (55 aa)
NDLASAGSSTVWAPFPPYAPPAQAHHASRLRRFRQTVFASSAILPFGCLYGWVIP*

>peptide 4 (63 aa)
MTWLPLALPLSGHPFLPMLPRRRPTTLRACGVFARRSLPVVPSSRLVVCMGGLSLNAMLCLVL*

Sequence

>CNT30578338
AATGACCTGGCTTCCGCTGGCTCTTCCACTGTCTGGGCACCCTTTCCTCCCTATGCTCCCCCGGCGCAGGCCCACCACGCTTCGCGCCTGCGGCGTTTTC
GCCAGACGGTCTTTGCCAGTAGTGCCATCCTCCCGTTTGGTTGTCTGTATGGGTGGGTTATCCCTTAATGCTATGTTATGTTTGGTGCTATGAATTACAG
GAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCCACTGTGCCGAGATGTGAGGTGCAGGTGGTGATGATCACCCCCCCAGGTCTCTCCAC
CTGTGGATTGATAATAAAACCAGTGAATTTTGTATCTCCCGCTGGCACACGATTTCTATTACTT