Detailed information on CNT30578337


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695509Oryza barthiiOryza sativa19.4240.2689.77215forward
CNT30371257Oryza barthiiOryza glumipatula22.1338.5892.65245forward
CNT30104124Oryza barthiiOryza rufipogon15.2729.5599.41169forward

Expression of CNT30578337

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MSIVHLRLPAASGVKLLLLAVLLLAVMHCGCAMAVQGGGGGGGGGRWRRMLRGPVSTPGSPMPNGQPNHNG*

>peptide 2 (48 aa)
IKLHAEAKGRVNLARTVLDSISPCPSFIFVFLQQAASSCCCSPCCFSR*

>peptide 3 (64 aa)
MWASPLLGPHVSHQVSGKSFQRISIWMCVLCCMLEIVSLKCSRTYIIVMVNLIKSMWLCVTNSI*

>peptide 4 (46 aa)
MTRFVLVRKKKNHCTHICVRICFHNFHFTKITYYREIFESYIQVTL*

>peptide 5 (29 aa)
MSATKSVGSHFRGSQSGCVCCVVCSKSCH*

>peptide 6 (29 aa)
MRICLFLFIHVPAKILFVMDLFPWIAEASY

>peptide 7 (30 aa)
MFKNLHNCYGKFNKIHVALCNQLYIEYMVL*

Sequence

>CNT30578337
AATTAAGCTCCATGCAGAAGCTAAGGGCAGAGTAAATCTCGCTAGAACTGTACTTGACAGTATATCACCATGTCCATCGTTCATCTTCGTCTTCCTGCAG
CAAGCGGCGTCAAGCTGCTGCTGCTCGCCGTGCTGCTTCTCGCGGTGATGCATTGCGGCTGCGCCATGGCCGTGCAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAAGATGGAGGAGGATGCTGCGCGGGCCGGTGTCCACGCCAGGGTCGCCGATGCCAAACGGGCAGCCGAATCATAACGGCTAATTAAATCAGGTGCTT
TCTTTACATTTTACGTGTAATTTACTGCCAATGCCCAAGAGGCGCCGCCATGCAGAAGAAATTTTCTCCAAAAATTTTCTCCTAAAAACTTGACAGATGT
AATTATAATACAATCGTAGTGTAATTATACTGTAACTTGCATGTAACTACAGTGTAACTTGTATATAAGTTTCATGTAATTTTGAATCATTAAATCTATG
ACAAGATTTGTTTTGGTGAGGAAGAAAAAAAATCACTGCACACACATATGTGTAAGGATTTGTTTCCACAACTTCCATTTTACCAAAATAACATATTATA
GAGAGATTTTTGAAAGTTACATACAAGTTACACTATAGTTACAGTGTAATTAAATGCAAGTTACAGTGTAATTACACTACGATTATACTATAATTACATA
TGTCAAATTTTTTGGGAGAAAATTTGTCGATAAATATATAGCAAAATCGCTGAAATAATAGATCTGATTGTGTGGGAAGAGGATTTCACCGTGACTGACA
TGTGGGCCTCACCGCTCTTAGGCCCACATGTCAGCCACCAAGTCAGTGGGAAGTCATTTCAGAGGATCTCAATCTGGATGTGTGTGCTGTGTTGTATGCT
CGAAATCGTGTCACTGAAATGTTCAAGAACTTACATAATTGTTATGGTAAATTTAATAAAATCCATGTGGCTTTGTGTAACCAACTCTATATAGAGTATA
TGGTTCTCTGAAATATAATGCGTATATGCCTCTTTTTATTCATCCATGTTCCTGCTAAAATCCTCTTCGTCATGGATCTTTTTCCTTGGATTGCGGAGGC
GTCCTAC