Detailed information on CNT30578324


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 6e-79

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710214Oryza barthiiGlycine max26.4885.5385.38260forward
CNT30555384Oryza barthiiOryza glaberrima70.0680.4798.11688forward
CNT30249355Oryza barthiiAvena sativa36.6647.8788.61360forward
CNT30446538Oryza barthiiSaccharum spontaneum36.6646.1590.83360forward
CNT30953Oryza barthiiZea mays36.6638.0588.61360forward
CNT30689745Oryza barthiiTriticum urartu33.643.3186.36330forward
CNT30597159Oryza barthiiOryza meridionalis38.1951.894.67375forward
CNT30371352Oryza barthiiOryza glumipatula60.7967.5396.48597forward
CNT30106559Oryza barthiiOryza longistaminata17.3175.8998.82170forward
CNT30147962Oryza barthiiBrachypodium distachyon27.980.8391.24274forward
CNT30104256Oryza barthiiOryza rufipogon68.9452.0894.98677forward
CNT30582828Oryza barthiiEchinochloa crusgalli36.6641.9688.06360forward
CNT30117950Oryza barthiiOryza nivara68.9481.6696.45677forward
CNT30724701Oryza barthiiLupinus angustifolius35.3430.7481.27347forward

Expression of CNT30578324

Peptides detected in this lncRNA

>peptide 1 (40 aa)
ALSSCFVLRQTTNLNIKDVTKKVHINNTRSQQLELQANPA*

>peptide 2 (41 aa)
MRSNLMSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 3 (79 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSWERRQMS*

Sequence

>CNT30578324
TGCTTTAAGTAGTTGCTTCGTTTTAAGACAAACCACGAACTTGAATATTAAAGATGTCACAAAGAAGGTTCACATAAACAACACAAGGTCACAGCAGCTA
GAGCTGCAAGCAAACCCGGCATAATCGAAAAGCAAATGTTCTTTCAAAAGCAGACACACAAACTGATAGATAGAAGCCCACACGGGCAGATCATAGGATA
GCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCCTGAACCCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAG
CCGACCTCCTCGTAGTCCTTCTCCAGCGCGCTTGGAGTACATGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTAGAGTTGGAG
ATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGT
CCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTA
CTTGCCGTGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGGAGCGGCGGCAG
ATGTCATAGATGGCCTCATTGTCGAGCAGGACAGCGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCGA
GCTTGGACTTCTTGCCATAGTCCACGGAGAGACGCTCAAGGAGAAGGGAACCGAGACCGGAGCCCGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCC
CTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAGGCACAGATCAACAATCTCCTTGCCAACTGAAACGAAC