« Back to Oryza barthii search


Detailed information on CNT30578311


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697110Oryza barthiiOryza sativa63.8474.4897.2286reverse complement
CNT30183781Oryza barthiiSecale cereale27.2317.8682.79122forward
CNT30296302Oryza barthiiTriticum aestivum27.2324.682.79122forward
CNT30391643Oryza barthiiTriticum turgidum27.4621.0383.74123forward
CNT30439146Oryza barthiiAegilops tauschii27.2328.0581.97122forward
CNT30258377Oryza barthiiAvena sativa27.2317.8986.89122forward
CNT30136185Oryza barthiiLolium perenne27.2318.5182.79122forward
CNT30111027Oryza barthiiOryza longistaminata77.6879.4595.69348forward
CNT30103845Oryza barthiiOryza rufipogon99.3399.7897.08445forward
CNT30118046Oryza barthiiOryza nivara85.2797.795.55382forward

Expression of CNT30578311

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HYGKVYMQNVYXLFYHTTYTNNGTSLCSSRST*

>peptide 2 (43 aa)
TTAKCTCKMSTXFFITQPIQIMVPAFAAPAQPNNHPSSYPIVI*

>peptide 3 (52 aa)
MNSSQVDDNSVASHWRHPHSAHRRHARHPHWRWRTAHTRRSRQGKRKQLGIHV

Sequence

>CNT30578311
CCACTACGGCAAAGTGTACATGCAAAATGTCTACANGCTTTTTTATCACACAACCTATACAAATAATGGTACCAGCCTTTGCAGCTCCCGCTCAACCTAA
CAACCATCCCTCATCCTATCCCATCGTAATATAATATATATAGCAACCAGCAATTAACTCGACCTGGCTAGAGATTTCACTCGCCAAAATTGTCCTGGTA
CCAAAAGAATCAGTTTAAACAACCAATAATAGCACATCTACAACTTGAAAGATGCCTCCTCTTCTGTGTAAATTGAAATTCTNATCTAAATGAACTCTTC
ACAAGTGGATGATAACTCAGTAGCTTCCCATTGGAGGCATCCCCATTCCGCCCATCGGAGGCATGCCCGGCATCCCCATTGGCGGTGGAGGACCGCCCAT
ACCAGGAGGAGCAGGCAAGGCAAGAGGAAGCAATTGGGCATACATGTT