« Back to Oryza barthii search


Detailed information on CNT30578308


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555465Oryza barthiiOryza glaberrima81.51100.199.91045forward
CNT30103902Oryza barthiiOryza rufipogon75.3584.5999.28966reverse complement

Expression of CNT30578308

Peptides detected in this lncRNA

>peptide 1 (38 aa)
METTRTTRIISIFISLVLLEQGGIYGYKYKLSKEERRYI

>peptide 2 (60 aa)
MHMKLSITQNLLCVKNYRNNRRKKKTSPSKGGEETHSRDVDGMRCWRAAAVGGDYSRQID*

Sequence

>CNT30578308
AAGAGAATTTTTTTCAGGCATTAACATATGAGAACCATTATCATTTTTACGGGACATATTAACACATACAATCAAAATTAGGGAGTATTACATTCAATCA
TGCATATGAAATTATCAATCACACAAAATCTTCTGTGCGTAAAAAACTACAGAAACAACAGGAGGAAAAAAAAAACATCTCCATCCAAGGGAGGAGAGGA
GACACACAGCAGAGATGTTGATGGCATGAGGTGCTGGCGTGCTGCAGCAGTTGGCGGCGACTACTCGAGACAGATAGACTAGCAGCTCCAATCCCATCCC
AGCCACCAGCAGCTGTTGGCATCGAAGCAGGAGCAAGGCGACAGGGCTCCAGTTTAGCCCCGCACAAAGCATGGTCGGGGTTGGACTCGGGTTCATCTGC
CAGCCAGACTACGCCGCTGTGGCCTAGAGCACCGCCGCGCGACGTCCACCATCTCCCCGTCACCTACTCCTTCGCCGTTCCTGTTGGGATAGGACAAGGC
GCTGGATCCCACACCGGGGAGGAGTTTGGCCTGCAAATCCGGCGCAGCCAAAGCTCACCAGCACCTTCATCGGCCTCCTCACCATCCTCATCGACAGCGG
CCTAGTCCGCCTGTAAGCTGGTCACCGGGGCTGACGTCCATTGGCGCAACATTTTCCTCCTCTTCTGGCTTGAACGCAGCCTACGCACGGTGAGCAAGAA
GAAGGCGACCTAACACCAAGGTCCTCCCTGACGATTGATCCAGTGCCCTGCTTCAGGACCACCACCACAGATCAAGGAGCGCGTCCTCCAGATCCGCCCT
CCTCAACGCTGCAGACGGCTGCTCATCGTTTGAAGAGCTGTTGGAGTAGTTCGTCGTCTCCTCACCCGCCGCCCATCGACCGGTGGCCTAAGCCACACAG
AGGGCGAGCACCGCCCGTCACCCTCTAGCACGGACAGAACCACTGGGCAACCTCGTCGGTGCGCGTGCTGGTCACCGACCGCCGTCACCGAATTGCTGCC
ATGGCCAGCCACGCGCTCAGATCCGAAATACCCGGAGAGAGGAAGAAAAAATAGGATCGAGATATGCGATTGGTTACAAGGGCCCACCACATACGATATC
TTATACGGAAACAAATCTCGTATATATAAGGAGTTCCGGATAAGGAAGTATAAATAGAGTTCTATATGGAAACGACAAGGACTACTCGGATTATATCCAT
ATTTATCTCCCTAGTTTTACTTGAACAAGGAGGCATCTATGGGTATAAATACAAGCTCTCCAAGGAGGAGAGGAGATACATC