Detailed information on CNT30578287


BLAST search results

BLAST vs Swiss-Prot:
sp|P68172|SAHH_NICSY, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675951Oryza barthiiSetaria viridis29.9865.8389.87158forward
CNT30639580Oryza barthiiNymphaea colorata21.0624.4583.78111forward
CNT3072357Oryza barthiiQuercus suber26.5713.6381.43140forward
CNT30543653Oryza barthiiBrassica napus22.9617.5485.95121forward
CNT3076639Oryza barthiiBrassica juncea22.9618.9484.3121forward
CNT30612366Oryza barthiiArabis alpina26.3851.2981.29139forward
CNT30601056Oryza barthiiFraxinus excelsior26.7626.0682.27141forward
CNT30651401Oryza barthiiRosa chinensis17.8435.0784.0494forward
CNT30680065Oryza barthiiTriticum urartu27.738.5291.1146forward
CNT30573685Oryza barthiiVitis vinifera17.8424.185.1194forward
CNT3026673Oryza barthiiPopulus trichocarpa27.715.4585.62146forward
CNT30151326Oryza barthiiBrachypodium distachyon17.6522.9192.4793forward
CNT30103811Oryza barthiiOryza rufipogon97.15100100512forward
CNT30723196Oryza barthiiLupinus angustifolius26.3817.4484.17139forward

Expression of CNT30578287

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MANFKLTLLMPQPLVVLVSLRLGELGQPGTKLAQVEGGHLLVEVLGKNVHLLLVLASALLLPQLKLSND

Sequence

>CNT30578287
AAACCAACGAAACAGGCATACAATCCAGCACAACGAGCAAAACTATCTTTAAAGGCAAGAATATTATTCATAAATGACGCATGATTTTTATCAAAACGCT
TGCAAATGATATCAGATAAGTAGAGTCAACAAGACAAAACTGTATCTGCCAAAGCACACCTCCCCAACTCCACCCAATTACGCCATTATTTCTGGGCAAA
AGCAAACGGCTTCCCATTCCTCCCCTTCACCAGTCTCAAACCATAAACCCCACAACAAATCCTCCTAAGTGACGGCATATAAGATGATGAAAACAAAGCA
GGATACTCCAGAGTCGTCATGGCGAACTTCAAGTTGACACTTCTCATGCCACAGCCGCTAGTCGTGCTGGTCAGCCTGCGACTTGGAGAGCTTGGTCAGC
CTGGCACCAAGCTTGCCCAAGTGGAGGGCGGCCACCTTCTCGTCGAGGTGCTTGGGAAGAACGTACACCTTCTTCTCGTACTTGCCAGTGCTCTTCTCCT
TCCACAGCTCAAGCTGAGCAATGACCT