Detailed information on CNT30578286


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 2e-74

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697150Oryza barthiiOryza sativa38.54101.3794.05370forward
CNT30678300Oryza barthiiSetaria viridis52.2951.789.44502forward
CNT30371538Oryza barthiiArabidopsis thaliana28.3357.2680.88272forward
CNT30618173Oryza barthiiSesamum indicum27.433.1781.37263forward
CNT30555417Oryza barthiiOryza glaberrima65.6278.0799.84630forward
CNT30265526Oryza barthiiBrassica rapa64.5862.4482.26620forward
CNT30136973Oryza barthiiLolium perenne25.3157.8687.24243forward
CNT3041219Oryza barthiiChlamydomonas reinhardtii22.537.8992.13216forward
CNT30208739Oryza barthiiHelianthus annuus21.2551.6585.78204forward
CNT30620135Oryza barthiiCajanus cajan21.6766.4582.69208forward
CNT30597072Oryza barthiiOryza meridionalis30.3140.0898.63291forward
CNT30360524Oryza barthiiLactuca sativa29.944.7782.93287forward
CNT30371316Oryza barthiiOryza glumipatula63.7551.8696.57612forward
CNT30104015Oryza barthiiOryza rufipogon64.4851.2496.45619forward
CNT30117869Oryza barthiiOryza nivara46.5675.2597.54447forward
CNT30174517Oryza barthiiVigna angularis14.3768.6686.23138forward

Expression of CNT30578286

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLSSRTATSVCSRREWVERTLLYGSTTEVET*

>peptide 2 (79 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSWERRQMS*

>peptide 3 (40 aa)
ALSSCFVLRQTTNLNIKDVTKKVHINNTRSQQLELQANPA*

>peptide 4 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

Sequence

>CNT30578286
TGCTTTAAGTAGTTGCTTCGTTTTAAGACAAACCACGAACTTGAATATTAAAGATGTCACAAAGAAGGTTCACATAAACAACACAAGGTCACAGCAGCTA
GAGCTGCAAGCAAACCCGGCATAATCGAAAAGCAAATGTTCTTTCAAAAGCAGACACACAAACTGATAGATAGAAGCCCACACGGGCAGATCATAGGATA
GCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCCTGAACCCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTTGATG
TCGATGCGGGAGAACACCTCGACGACGCTGGTAGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCG
GCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTT
GGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTG
GTGATCTCCGCCACGGAGAGCTGCTCGTGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCGAGCAGGACAGCGACATCGGTGTGCTCAAGGAGGG
AGTGGGTGGAGAGGACACTGTTGTATGGCTCAACCACAGAGGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCGAGCTTGGACTTCTTGCCATAGTC
CACGGAGAGACGCTCAAGGAGAAGGGAACCGAGACCGGAGCCCGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCG
GCAAGCTTCCTGATGCGGTCAAGGCACAGATCAACAATCTCCTTGCCAACTGAAACGAAC