Detailed information on CNT30578263


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL2|NLT2B_ORYSJ, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697724Oryza barthiiOryza sativa34.4847.6994.02351forward
CNT30676686Oryza barthiiSetaria viridis16.844.5387.13171forward
CNT30524155Oryza barthiiSetaria italica19.0642.8386.6194forward
CNT30555885Oryza barthiiOryza glaberrima93.0387.0499.05947forward
CNT30247616Oryza barthiiAvena sativa19.8420.7483.17202forward
CNT30471439Oryza barthiiSaccharum spontaneum23.3889.4788.24238forward
CNT3068317Oryza barthiiLeersia perrieri33.9969.287.86346forward
CNT30367388Oryza barthiiSorghum bicolor13.7538.5787.86140forward
CNT30597117Oryza barthiiOryza meridionalis34.8771.2991.83355forward
CNT30371435Oryza barthiiOryza glumipatula28.3984.0192.73289forward
CNT30104631Oryza barthiiOryza rufipogon19.6557.4799200forward
CNT30117815Oryza barthiiOryza nivara22.566.3891.7229forward

Expression of CNT30578263

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MLAALPALSPLMPRAAFLRQLHAVRLSAVLLAAALRLLTPLQQAADGPEPPRA*

>peptide 2 (56 aa)
MDAHTCMHGDRSTLASSSFYSRIRTDTTNIGYRIRSAPHIDPPSRFCIHINDPSDR*

>peptide 3 (51 aa)
MLDDVTDERIYTSVELYKELYMYQKELYVCVIFQNKHVVQGVAVHACRISS*

>peptide 4 (32 aa)
MIHPIDSSAHPAHMHIYILDDGVYIMQLAMLN*

>peptide 5 (31 aa)
MHVESLASSLWYTYTSRRSKTYEMNTQEEES*

>peptide 6 (53 aa)
MAAMVVCGPARSRAATRATNTSCARAISILVVCADDRSTCCCCWCVVLVCCCR*

Sequence

>CNT30578263
TGAAATGACTTCCTTGTGACAGCCCGCTAATTCTAGGCATGTTAGATGACGTCACAGATGAGAGGATCTATACTAGTGTGGAGCTCTACAAAGAGCTATA
TATGTACCAAAAAGAGCTATATGTATGTGTAATATTCCAAAACAAGCACGTAGTACAAGGAGTTGCAGTACATGCATGTAGAATCTCTAGCTAGCTCTCT
CTGGTACACGTACACCTCGAGAAGGAGCAAAACGTACGAGATGAACACACAAGAAGAAGAAAGCTAGCTAGCCTGACCGGCCGGGCCGATCAACCATGGA
TGCACACACATGCATGCATGGTGATAGATCGACCTTAGCTAGCTCATCTTTTTATTCCAGAATACGTACAGATACTACTAATATTGGATACAGAATTCGA
TCGGCTCCACACATCGACCCACCGTCGCGCTTCTGTATACATATAAATGATCCATCCGATCGATAGCTCAGCTCACCCTGCACACATGCACATATATATA
TTAGATGATGGAGTATATATCATGCAATTAGCCATGCTTAATTAATTATATTTAACAGAATATATATAATTAGAGATGATGAGATGAATACCTGGAGCAG
TCGATGGAAGCGCTGATGGTGTAGGGGACGCTGACGCCGCACTTAGAGGGGATGCTGGCGGCGTTGCCGGCGTTGAGCCCCTTGATGCCGCGGGCCGCGT
TCTTGAGGCAGTTGCACGCGGTGCGCCTGTCAGCGGTGCTGCTGGCTGCGGCCTTGAGGCTCCTCACGCCGCTGCAGCAGGCCGCCGACGGGCCGGAGCC
GCCGCGGGCGTAGCTGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCATGGTGGTGTGTGGGCCCGCCAGGAGCAGAGCTGCC
ACGAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGATCGATCGACTTGCTGCTGCTGCTGGTGTGTGGTGCTCG
TTTGCTGCTGCAGGTGAG