Detailed information on CNT30578254


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 2e-34

BLAST vs NONCODE:
NONGMAT000219, E-value = 1e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021397Oryza barthiiCitrullus lanatus34.0514.3584.2195forward
CNT30727927Oryza barthiiCorchorus capsularis91.7638.9680.86256forward
CNT30504800Oryza barthiiNicotiana attenuata56.2735.5283.44157forward
CNT3041114Oryza barthiiChlamydomonas reinhardtii36.5614.5192.16102forward
CNT30228891Oryza barthiiAnanas comosus91.7638.585.94256forward
CNT30204030Oryza barthiiHelianthus annuus45.1630.3688.1126forward
CNT30340361Oryza barthiiEragrostis tef97.4952.0192.65272forward
CNT30106557Oryza barthiiOryza longistaminata65.9585.9897.83184forward
CNT3024728Oryza barthiiPopulus trichocarpa60.5720.8182.84169forward
CNT30104166Oryza barthiiOryza rufipogon99.2850.2799.64277forward
CNT30333509Oryza barthiiCynara cardunculus35.1317.8285.7198forward

Expression of CNT30578254

Peptides detected in this lncRNA

>peptide 1 (91 aa)
ADLLVVLLQRGEVLAGLGELPLLHALADVPVDEGAVGDLRHGELLVVGLLGRDHRGVGGKHEVDPRVGHQVGLELVDIHIQSTVEPQGGSQ*

>peptide 2 (36 aa)
RPPRSPSPARRGPRGPRRTPPPPCPRRRTSGRRRCW*

Sequence

>CNT30578254
GCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCCTCGCGGGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCGCCGACGTACCAGTGGACGAAG
GCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGT
AGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCGTCGAACCTCAGGGAGGCAGTCAGTGAGGA