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Detailed information on CNT30578242


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370294Oryza barthiiOryza glumipatula41.9146.6396.7394forward
CNT30117499Oryza barthiiOryza nivara16.2842.7498.69153forward

Expression of CNT30578242

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVTLIKKRMALKVGQFSGFLHSQTQKPYLPEGGWIHIYIAIAGC*

>peptide 2 (30 aa)
MIKVIGVTFVDGGSIVLQLETMLPVTYGFN*

>peptide 3 (43 aa)
MLELQWLLSLRRGWHSKWGNFLVFFIHKLKSHTYPREVGYIYI*

>peptide 4 (31 aa)
MFVQTYVVHSQVTIRQTAQGKKIQCHSTHDIE

Sequence

>CNT30578242
GCCATTGTCAATTTCATTCTAAAAAGAAGGGGAAGAAAACAAAGATAATTCCTGCAATGGAACAGTAACATTCTCCCTCATTGATTGGTACTCCCTCCAT
CCACAAAAGTTAGACATATTTCACATTTGAGTTTTTCCAAATAAGTTGTTCTTATTTGTAGTCTTTATGCATTCAAGACTTAAATGAAGAGATAAATTAA
ATGTTTGATTAGAACCAAAGGAGTCATCTATATGTTAGAACTTCAATGGTTACTCTCATTAAGAAGAGGATGGCACTCAAAGTGGGGCAATTTTCTGGTT
TTCTTCATTCACAAACTCAAAAGCCATACCTACCCGAGGGAGGTTGGATACATATATATATAGCCATAGCTGGCTGCTAGCCTATTGCTGCACACTCCTA
GTCTAAAATTCAAAATTTGAATGGGATGCTGTCCTAGAGGGCATCCAAACTGAATAAAGCATAAAGGAGGCATAAAGGAGATGCTAACTGCTGCTGTCCT
ACTAACCGCAGCTGTCCTAGCAACTGAAAAATATGCTAAAGGGGTAGATGTTGTCCTGAAAAGGTGAAACTACCCAAAAGCAAAAAGAAGAATCACGACC
AAGGACCACAAAGACTTATCCAACACTAAATACTCATTGGTTGTATGCTTACATTCAATCCTTGATTTTGTAATATCCAAGATGATTTAATTTCTTCTTG
GTCTTGATGATAAAAGTAATAGGTGTAACTTTTGTGGATGGAGGGAGTATAGTTTTACAGCTGGAAACGATGCTACCAGTAACATATGGCTTCAACTAGT
CCTAAGATGGTGTGAAAACCATGACCATTAATTAATACTTTCTATGTTTGTTCAGACTTATGTAGTTCATAGTCAAGTAACTATTAGGCAAACTGCACAA
GGAAAAAAAATTCAATGTCACAGTACACACGATATAGAGC