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Detailed information on CNT30578214


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694276Oryza barthiiOryza sativa35.5936.4197.89473forward
CNT30596379Oryza barthiiOryza meridionalis35.5934.5398.73473forward
CNT30109541Oryza barthiiOryza longistaminata49.2933.6499.39655forward
CNT30102291Oryza barthiiOryza rufipogon43.9494.8197.77584forward

Expression of CNT30578214

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKAVIMIQHFDCQGQCVAMCASNNYFILY*

>peptide 2 (34 aa)
SRDDTPRVPTAAAALSYAPSHAPAATACGSSPVQ*

>peptide 3 (32 aa)
MWLFFTVFLLKSDFINQFKPALRWVTLGWLGS*

>peptide 4 (81 aa)
PRAMTPRESLRQPLRFPTPPRMPPPRRRVDPPPCSEGALLGRCRPVRRPYPNPSMSEAIVGSLVFSGKIRVLRKSGKFRLA*

Sequence

>CNT30578214
CCTCGCGCGATGACACCCCGCGAGTCCCTACGGCAGCCGCTGCGCTTTCCTACGCCCCCTCGCATGCCCCCGCCGCGACGGCGTGTGGATCCTCCCCCGT
GCAGTGAAGGTGCCCTACTAGGTCGTTGTCGTCCAGTCCGCCGACCATATCCCAACCCATCGATGTCTGAAGCTATTGTAGGTTCCCTTGTGTTCTCAGG
GAAAATACGTGTACTCCGTAAGAGCGGAAAATTCAGGCTTGCTTAGTCACCCAAGACGCTGCCCCCTGCCTACTCCATCTCCAAGGAAGCGCCTGGGCCA
CTGGTCTGGTTGGTTAGCGAGGATGGAGAGCACAGAGGAGTGACATGATTCCCATCCTCATTCTTTGGAGAGTTTGATAGGATAAAACTTTGTACTTTAA
TTAGCTGGAATCTGGCCATACCCTTGAAGAGGACAAGGGAGCTACACACAAAAAAAATGTATTGGCAAGAGATGCTTTGCACTGGACAAAGCATTGATCT
TCTGTTTTCTTAAGCTTGTTGTGAAGGAAACACTATCTGGATATTGAATTTGATTGGAGATCAAATGAAGGCAGTGATCATGATCCAACACTTTGACTGT
CAAGGACAATGTGTTGCCATGTGTGCAAGTAACAATTACTTCATATTATATTAGAAGTAGTTCCTGCTACACTTCCATTTGCCAGCCAATGTAATGCAAT
CCTTTTTCTCTATCATGTTTTCTATCTGAAGTTTTATTGTGCTCCGTATTTTTCCAATATTGTTATTCCTTCAACAAAATCAACTGATCCACACATTACT
TCCAACACATACTTCAGTTTTTTTTCCAGAAACAGGATGTGGCTTTTTTTTACAGTATTTCTGTTGAAGTCAGATTTCATAAATCAATTTAAACCAGCAT
TACGATGGGTCACCCTCGGATGGCTGGGAAGTTAGCTAGAAGCCGAGATTGAGCAGTATTTTTTGGCAGTAACTGCTAGGATGATGGACATGTGCAGTGT
GAAATCCCTTCCAGTGCCCAACTGCTAGGATGATGGACATGCTCATGGGATACCCCTTAAGACAACGACGTCGAGCACTATTCCGATAACAATTGACTGG
AGTACTATTATGAGACAATGTCCTAAGAGTAACTGAGATATAAACCTCTATGGTTTGCATACCATATAAACTTCTACTGGTCACACTATAGAAGATATGC
ACTTGCTGTTGATTATGTAAATGTTATATACTGAAGTACTATTTTGAGCACTTGCTATTGATCATGTAAATGTTATATACTGAAGTACTATTTTGAGACA
TTTTTTATAGAGTAAAGTGCACGGGCGGT