CANTATAdb - search

Detailed information on CNT30578208

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001499, E-value = 1e-177

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30110484	Oryza barthii	Oryza longistaminata	43.14	17.5	86.43	280	forward
CNT30104235	Oryza barthii	Oryza rufipogon	85.82	50.82	99.64	557	forward
CNT30117235	Oryza barthii	Oryza nivara	64.71	13.13	99.76	420	forward

Expression of CNT30578208

Peptides detected in this lncRNA

>peptide 1 (39 aa)
VGFTLDKVYMLPCLYTLQLFLIFLPPIVWHQVHGSTWVW*

>peptide 2 (44 aa)
MVVFDHSLRSFYIALVNLLGEVHYNSLYDIEVIKFDGIPMPVAG*

>peptide 3 (49 aa)
LVLHLIRYICYHVCTHCNYFSYFYLQSYGTRFMVAHGFGKSIPMKNGGI*

Sequence

>CNT30578208
GTTGGTTTTACACTTGATAAGGTATATATGCTACCATGTTTGTACACACTGCAATTATTTCTCATATTTTTACCTCCAATCGTATGGCACCAGGTTCATG
GTAGCACATGGGTTTGGTAAATCTATCCCAATGAAAAATGGTGGTATTTGATCATTCCCTTCGTTCCTTTTATATAGCTTTGGTTAACCTTCTGGGTGAG
GTGCACTACAATTCCTTGTATGACATTGAAGTCATAAAATTTGATGGAATACCAATGCCTGTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCATG
AGTATTATCATTTTCTCCCTGTAAATTGCAACAAGGTGTTTTATTAAATGGCTGCTTCGTTATAACATGGTGTTCTGTTCATGTGAACTTGTGAAATGGC
TGAGAAGGTCTTTTTAGCTAAAGTGCAGTAGTTGTGCTATGTTGTGAAGAGTGAAATGAAGTATTAGCAAAAGGGTGAGACATGGGTTAAAGTTCCAGTG
ATATGAAATCGTTCATCCCTGTCTTGATTCCTGGAAGATGATATTTTTTTCCAAGTAGCTTTGATGAAATGTAGCAATGAGTAAATGACCAAAATTGTAA
TAATCTTTGTATGGATTTGAACACCATCGATATGATTTTTTAAATGAAC