Detailed information on CNT30578194


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555931Oryza barthiiOryza glaberrima91.68100.8797.491157forward

Expression of CNT30578194

Peptides detected in this lncRNA

>peptide 1 (95 aa)
DPVALAARLLRPAAPAAFLPPPAPSLRRRRWCSVAGRHHHRRRCAAAPFSAAVRWIDLQSSSSQRLGAGQEEQRSQGIGRKRGKVGDFIFQDFTN*

>peptide 2 (54 aa)
MALTLCYLFVFRPIFKFMTLFMFHYSGCSVYIIQEPCVAMGVQFGSLFIILEKR*

>peptide 3 (55 aa)
SCSPSRPASAPCRSCRVSTTTGAVSTPPPLVQCRRSPPPPSPLCCCSVFCCCSVD*

>peptide 4 (31 aa)
MHKSCVCFTSLRLYLLSILYSLLCLIWFLGT*

>peptide 5 (46 aa)
MLLIRVSTHIQIHDVIHVSLFRMFCLHYSRTMRSHGSAIWVFIHYP*

Sequence

>CNT30578194
GATCCTGTAGCCCTAGCCGCCCGGCTTCTGCGCCCTGCCGCTCCTGCCGCGTTTCTACCACCACCGGCGCCGTCTCTACGCCGCCGCCGTTGGTGCAGTG
TCGCCGGTCGCCACCACCACCGTCGCCGCTGTGCTGCTGCTCCGTTTTCTGCTGCTGTTCGGTGGATTGATTTGCAGAGCAGCAGCAGCCAACGACTGGG
GGCAGGGCAGGAAGAGCAGAGAAGTCAAGGAATTGGGAGGAAGAGAGGCAAGGTTGGGGATTTTATTTTCCAAGATTTCACAAATTGATCTCAAAGTTGA
TTTTTCTCCACAGGAAGGCTGTAAGGGTGTGGAGGGTTCCAACGTTGGAGGATTGAGTCAGAGTATCAAAGGAGTTAAGGCAAGTATAAGACGGACTTAT
GTGATGGACAAACTGAGTTGTTTTGTTTGGCTTTACTTGTATAATTATTATTCAATTGCTTGATATTACTGATTGTATGGCTCTGACGTTATGCTACTTA
TTCGTGTTTCGACCCATATTCAAATTCATGACGTTATTCATGTTTCATTATTCCGGATGTTCTGTTTACATTATTCAAGAACCATGCGTAGCCATGGGAG
TGCAATTTGGGTCTTTATTCATTATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGTAATGCTAAGAGGATATTCACACCTGCCCGGGAGGGA
ACTACTATCTTTTGACTTCTTTGGTTTAAAATAAAATAAATCCAACCCTTCATATTGGTTTCTTAATGCATAAATCATGTGTATGTTTTACTAGTTTAAG
ATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACTCTTGGA
CTACACATTATTATTGCACACAACTGAAATTTAGTTTTAGATTATACTTTGCTCAGCAACTTGTAAGGGTCATTGAAGGTTCTTATTCTTATTTTTCACG
TGGGATTTGTGGAGCTACGATGGTCTAGATTGTGTGAATTATATCGGTATTGACTTTTCTTATACTACCTGTCGTGATGTCCGTATTTTTAGGGGAGACT
CTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTTGAGTATATTTTGGTGTGGCATTCTAGGTACGTGGTTAACTAGAGTGTTACAGACTGTTGGGCG
GTTTCTCCGACCGTCCATATGGGTAAGACTGTTAAAATACATGAAAACAACTGCATGTAAAA