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Detailed information on CNT30578188


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000151, E-value = 8e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555302Oryza barthiiOryza glaberrima95.6385.4999.7984forward
CNT3099567Oryza barthiiOryza rufipogon45.2910097466forward

Expression of CNT30578188

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPTNSNFLQLHLTVDSNGHRVDPWIHQGF*

>peptide 2 (32 aa)
MLAPKYHPRCHPMDPWIHQGLRMLASKYHPKC*

>peptide 3 (61 aa)
MAGREQEKKHNTGTGKPHPLYIAQSASCKKCLRASIYACVDMHYVQIIFNFMLSRFIFSLFF

>peptide 4 (80 aa)
MRAQDADEFELLATALNSRFQRPSGGSLDSSRFLNVGAEVSSKMPSDGSLDSSRSPNVGVEVSSKMLVVTAFCNCDGTDT*

Sequence

>CNT30578188
CTCAGCTTCAATCTAGTCTGTTTAGCACTTGAGCTAGTATAAGCAAAACGAATCAAAACTTCCCCACATTTTCTCCATCAACCAAGCCTCATAGAGCACA
GGTGGTCCAGGCATGAGCACTCACGCCGCCGGCCGCAGGCCACCAGATTGAGCTGCTTGTGGCGAAAACAGCGCGCGGTCGCGCCGCTGGATTCCGCTGC
TTGTGGTCAACAGGAGGAGCACAAGCGTCGCCGCACGCGAGCATACCACAGTCTGTGATCTAGCTGCATCAAGTGTATGAGCTTGGATATTCGTACATGA
GAGCACAGGATGCCGACGAATTCGAACTTCTTGCAACTGCACTTAACAGTAGATTCCAACGGCCATCGGGTGGATCCTTGGATTCATCAAGGTTTCTGAA
TGTTGGCGCCGAAGTATCATCCAAGATGCCATCCGATGGATCCTTGGATTCATCAAGGTCTCCGAATGTTGGCGTCGAAGTATCATCCAAAATGCTAGTT
GTTACTGCATTCTGCAATTGTGATGGCACTGATACATGAATAGGAAATTCATCTGCCATGGTGCCAAGATTTGGCGGAGGCTTGTATTATTGTGGAGTAG
CAATATGTGGATTTTAAGATAAAATAGTTGTGTAATCTTGCGTATTAACCAGCTCAGTTATTTCTTTCCGCCACCAATTTTATTGGTTAAATTTGCCACC
ATTTTTCTGTTAACGTCCTTTAATTACGTTGTTTCCACCTTAATCCTGATGTGACACAGAACGGCCGTTAACACCGTAGACAGAAAAAGGAGCGCAAGGC
ATAAGGCCCACCAGAAAAACCCCAACCAATTAGGAGCTAACACATGGCAGGCAGGGAACAGGAAAAGAAACACAACACAGGAACAGGGAAGCCGCATCCG
TTATATATAGCCCAATCTGCCAGCTGCAAGAAGTGTCTTCGTGCAAGCATATATGCATGCGTGGACATGCACTATGTACAAATAATTTTTAACTTTATGT
TGAGTCGATTTATTTTTAGTTTATTTTTT