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Detailed information on CNT30578175

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697800	Oryza barthii	Oryza sativa	44.75	40.27	98.17	273	forward
CNT30371396	Oryza barthii	Oryza glumipatula	45.08	40.15	97.82	275	forward
CNT30109910	Oryza barthii	Oryza longistaminata	18.52	48.92	97.35	113	reverse complement
CNT30103992	Oryza barthii	Oryza rufipogon	72.13	70.97	97.95	440	forward

Expression of CNT30578175

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLMHARSVQHKVYRDRERDDQRCIDMPQLLFLL*

>peptide 2 (32 aa)
CRAREHDVHLSIFAYDILSVQKNEHKTGRDIF*

>peptide 3 (54 aa)
AELGSMMCIYQFLHMIYSPYKKTNIRLDVTYSSTTNLNIRLFLWDRGSRGDRGM*

Sequence

>CNT30578175
TGCAGAGCTAGGGAGCATGATGTGCATTTATCAATTTTTGCATATGATATACTCTCCGTACAAAAAAACGAACATAAGACTGGACGTGACATATTCTAGT
ACAACAAATCTAAATATACGTTTGTTTTTATGGGATAGAGGGAGTAGAGGGGACAGGGGAATGTAACAAGGAAATTACTACAGATTGCCTCAGCAAGAAG
CTGCCAAGCTGGAGTACGTAGTTAGCTAGGTCCAAGTCTGGACAAGATGCAATTCATCAACGTAGGATTACACGTACACAGAGCAGTGTACAGACTCAAG
AAAATTAAGATAGCATGCTGATGCACGCACGGAGCGTGCAACATAAAGTATACAGAGATAGAGAGAGAGATGACCAGCGCTGCATTGATATGCCCCAGCT
GTTATTTTTACTGTAGCTATTATTTTGGCTAGTTGATCAACTGCGAGCCAGCATCGATCGATATATCGATCGGTCGGTCCAAGCAGGATTAATCGATCTA
GCTGACCCTGCACCAATGAAATAATCATGCATATATACAGTGGATTAGTCAGTAAATTAAGTTGAATTAACTTGAAAAAAAGTAGCATGCATATGCATGG
ATGATTAATT