Detailed information on CNT30578174


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001239, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555534Oryza barthiiOryza glaberrima16.366.49100492forward
CNT30339734Oryza barthiiEragrostis tef2.1924.3589.3966forward
CNT30104197Oryza barthiiOryza rufipogon22.0610098.2666reverse complement
CNT30117930Oryza barthiiOryza nivara62.27100.4896.811880forward

Expression of CNT30578174

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MGPTCQPLQPFFFFLILLHFLSIFLTILFILSGGQRRAMATTDPRRPRPPRQLLEEETASFQSSE*

>peptide 2 (91 aa)
MEPMTLLSMDVQRVAFFGGWPLFYSIHTIGSARAVQPSVAELKLQPDLLRSWLSSWLNPIIQTNKNLLLSAELASIAYFSCHYYKKQIYPL*

>peptide 3 (85 aa)
MQDSDGAPPSPWWRHAQAEGGRAAAAPAICEGREGRQGRDGAASGERGEKVGGAHGWPWLRVAKGWLSLASSSPCLAMAIFCQVG*

>peptide 4 (58 aa)
MWLACLTNGIIKSLDDDAYRCSLYILSTGKYIFNIQFIFYFHQFQDDRVNNIEKILSQ*

>peptide 5 (36 aa)
MSTQPINQSDRSTPKKKNSSLEAFRPSNFVSYEVHT*

>peptide 6 (45 aa)
MHKQREEGRPRRRRYAKGGRGGRAGMVRLVGREGKKLVGPTDGHG*

>peptide 7 (48 aa)
MKPRRSFLTSIKSPSESDHRPAIPISSSDSKPSSLSLSLCVCVRRIPW*

>peptide 8 (55 aa)
KWHSCRSDHQGQGLSETRDSLIAHRNLRKISKESGKFLRFKGVQLNSYEVDLLMY*

>peptide 9 (29 aa)
MKWISLCTNWVLMFRFCSAFSHGTRSHHE*

>peptide 10 (32 aa)
MVAACTSRGRKGGRGAGDMRREGGAAGQGWCG*

>peptide 11 (33 aa)
MIKHVGIHLSSRSDRLSAIIVDKSSLDACIMHS*

>peptide 12 (34 aa)
MMTHIGVHYIYYRLVSISLIYSLSFIFTNFKMIG*

>peptide 13 (29 aa)
MNHTICRMRLACLTNCGRHHKLTTCGSHA*

Sequence

>CNT30578174
GTAAATGGCACTCGTGTAGATCAGATCATCAGGGCCAGGGTCTGTCTGAAACTAGAGATTCTTTAATTGCACACAGGAATCTTAGAAAAATTTCGAAGGA
ATCCGGCAAATTCTTGCGTTTTAAAGGAGTCCAATTGAACTCTTATGAAGTGGATCTCCTTATGTACTAACTGGGTTCTTATGTTTCGTTTTTGCTCAGC
ATTTAGTCATGGCACAAGATCACACCATGAATAAACTTTAGCACCAAAACTGTCACTACGTTTTAGTTCATGGCCTTTAACTGTCAGGCTTAAAATACAG
TAGTAATCCAGAGCAAAAGGTTAAGCTGGCCATACGAGACAAAAGAAATAAAAAAAGATGGCCGAGTAGAGCATCTCCAACTGTCTTTCCAAATCCAACT
CTCTAAATATTTATTTGGCTAACTCTTCATCTAATTTGTCAAGTCAAACTCGTTGTTTACTCCAATAGTCTCTTCATTCACCCTCTCTATTCTAACTCTA
TAACAATGGGACCCACGTGTCAGCCTCTACAACCCTTCTTTTTCTTCCTCATACTTCTCCATTTTCTCTCCATTTTCCTCACAATCCTCTTTATCCTCTC
CGGTGGACAACGCAGGGCGATGGCGACGACGGATCCTCGCCGGCCTCGTCCTCCTCGACAGTTGCTGGAGGAGGAGACGGCGAGCTTCCAGTCGTCGGAG
TAGCGGGATCCGGAGGAGGCGCGCAGCGGCAGCGGGCGGCAGTGGCCACGCGCGGCGAGGCACCGCCCCGTTCGCTCCGCTCGCTGCGCTGACCAGTCGA
GGTGGCCGCTGCCGGTCTCCGCTCCGCTCGCCAAGGTACCATCTCGCTGGCGGCAATGAAGCCGAGGCGCTCCTTCTTGACCTCTATAAAATCCCCAAGC
GAATCAGATCACCGACCAGCCATTCCCATCTCCTCCTCCGATTCGAAACCCTCGTCTCTCTCTCTTTCTCTGTGTGTGTGTGTGCGCCGGATTCCATGGT
GACAGCGGGGAGCAGCCGAGGAGGAAGGGCGGGAGGGGCCGGAAGGCGCTAACGGCGGTGCTGGACAACGACGCCAACATCTCCGCCGGGAAGGCCGACG
GCGACGGTGAGCTCAGGCAGAAGATGCAAGATAGCGACGGCGCGCCTCCTTCCCCATGGTGGCGGCATGCACAAGCAGAGGGAGGAAGGGCGGCCGCGGC
GCCGGCGATATGCGAAGGGAGGGAGGGGCGGCAGGGCAGGGATGGTGCGGCTAGTGGGGAGAGAGGGGAAAAAGTTGGTGGGGCCCACGGATGGCCATGG
CTGAGGGTGGCCAAAGGCTGGCTAAGTTTGGCTAGCTCGAGCCCATGTTTGGCCATGGCTATTTTTTGTCAAGTGGGATAGTCATTCTACTGGAGTGTAT
TTTTTGCTCAAAGTAGCTAAAATTTAGTTTGGAGAGTGGAATGGAGAGGCTGTTGGAGATGCTCTAAAGAAATGGCTGGAGCACTGCAGTGACAGTTGAG
GAGAACATGCGAGGGCTCCGAGCAATGATCATTTGCTTACACATCATCCATAATTTTTCTTTCCTACGATAGAAATCATTTTTTCTTACCCTGGGATAGT
GATCTATTTTTCTCAGTAGCTATTTGTGCTTGGAAATGCAGAGGAGTTGATTGAACGAGGAACGCCAAAGGCAAGATTCATCTGTATCTTTGTTAAACCT
AGTAATGGAGCCAATGACATTGTTGAGTATGGATGTACAACGGGTAGCATTTTTCGGTGGTTGGCCACTTTTTTACAGCATACATACCATAGGCAGCGCT
CGGGCAGTGCAACCGTCAGTGGCAGAGCTCAAGTTACAGCCCGATCTGCTCAGGAGTTGGCTCAGCAGTTGGTTAAACCCCATAATTCAAACTAATAAAA
ATTTACTACTGTCAGCCGAACTAGCTAGCATAGCATATTTTAGTTGTCACTACTATAAGAAACAAATATATCCTCTTTAACATTCAGATATGCTATTTTT
TCATAAACTTTTCTACAATACAATTGTATACAAATCGAGTTGCATTTTAGAAACCGTATCAATGTAAAAGCGTCACTTGTGATTGAAGGGAGTGATTTTA
GGCTTTTCTACTATAACAAAAAAGGAACCAGTAGTTACCTCATGATTAAACATGTGGGCATCCATCTCTCAAGCCGATCAGACAGATTGTCAGCGATTAT
TGTAGATAAATCATCCCTAGATGCATGCATTATGCATAGCTAGTTAGCTACATGTCGACACAGCCAATTAACCAGTCTGATCGATCCACGCCCAAAAAAA
AAAACTCTTCGCTGGAGGCTTTTAGGCCCTCCAATTTTGTGAGTTATGAGGTGCATACTTAGCCACAGGACAAACTAAAGCTGACCTGCATTTTATTTTA
TATTTGTTCAGTTCAGTTGTGCATGCATGCAAAGAGGGATCCTTTGATGGCCTGATCAGCAGTAAATTGTTTATAAACATGGTTAGTAAACAAAAAATCA
TTATAAACAAAATGAGATTTTTTTTAGTGAAGAATATAGGTATACGATAATATATAATACATTCCGCAACAGAAAATGAATCACACGATCTGCCGCATGC
GGCTCGCATGCTTAACAAACTGTGGTCGTCATCATAAGCTCACCACATGTGGCTCGCATGCTTAACTAACGGCATAATTAAATCACTTGATGATGACGCA
TATCGGTGTTCACTATATATACTATCGACTGGTAAGTATATCTTTAATATACAGTTTATCTTTTATTTTCACCAATTTCAAGATGATAGGGTAAACAACA
TTGAAAAAATCTTGTCGCAATAGCATAGCTCTATTTCGCCCTTGCATTNGGGTACTGCTCTTCTAGATGGTGGTGGCGAATTCACGCCCACAACCAGAGA
ATTGGTGAGTGACGCAAGAGAAAAGCCGCTTATACACCAGTCGACGAGAGCGGCGCATAATGCCTCCTCCCGGAATCTTAATCCAACACCAATGCCGATT
GCAGCGGCTATAATTAACT