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Detailed information on CNT30578173


BLAST search results

BLAST vs Swiss-Prot:
sp|P93318|M660_ARATH, E-value = 1e-31

BLAST vs NONCODE:
NONATHT001124, E-value = 6e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671247Oryza barthiiSetaria viridis41.6280.2498.371413forward
CNT30378674Oryza barthiiArabidopsis thaliana13.7822.2491.24468forward
CNT30618774Oryza barthiiSesamum indicum22.037.4487.43748forward
CNT30269710Oryza barthiiChenopodium quinoa5.8347.1494.95198forward
CNT30162048Oryza barthiiPistacia vera7.0186.2393.7238reverse complement
CNT3098426Oryza barthiiSolanum tuberosum6.8327.4296.98232reverse complement
CNT30226334Oryza barthiiHordeum vulgare39.09100.3897.591327forward
CNT30592653Oryza barthiiMusa acuminata20.6529.2486.59701forward
CNT30259423Oryza barthiiBrassica rapa10.5224.3992.16357forward
CNT30627167Oryza barthiiDaucus carota15.4947.9191.83526forward
CNT30680520Oryza barthiiTriticum urartu43.2750.7698.091469forward
CNT30341981Oryza barthiiEragrostis tef4.7723.5890.12162reverse complement
CNT30151167Oryza barthiiBrachypodium distachyon3.4520.0399.15117forward
CNT30100822Oryza barthiiOryza rufipogon7.5799.6198.44257forward
CNT30115142Oryza barthiiEutrema salsugineum3.4528.7596.58117reverse complement

Expression of CNT30578173

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MFDLGGYQFWNFFSRHPRQSTSLRDGSLVFVEIMCQPW*

>peptide 2 (36 aa)
MIEARTLSGQVPLIDHNDIVEMLHGPIYIETEKEEP*

>peptide 3 (52 aa)
MKGFSHLEVSGGVKEIDSSLSLAFLLTLALYIVIYFLSIVSVGTDHWYWIYR*

>peptide 4 (42 aa)
MQLRGPLVGPDRWWYHTLLKGTVRETLASYGSVLESGPPPFL*

>peptide 5 (33 aa)
MKEKGLRIRKTKEAWRADYKTTTTIQAMSDSEA*

>peptide 6 (88 aa)
MPADQFTMSLSLTLVKEATWIGLGLLRLMRPRSRSLRSIFLIGASICMGNSLLKDPAQCPLPSPAAFRPKGVYNFVFRTLMPDRETAC*

>peptide 7 (29 aa)
MCLEMAVSCLPARGESAPGASLCCVWPVL*

>peptide 8 (64 aa)
MTLLTVGQRLTSWKRVIAPRLGRNPCECTENRGSNNRFNKWASPSPPLRSSLTSSFSFCGGCFS*

>peptide 9 (89 aa)
MFPFFHSQVKGESHASVCGSRSHALISTGAHSRPAALPKPIIISVPRPHCWKGSASKPYVELPPHTAPLGMGVGPAQACAVKVVVHALS*

Sequence

>CNT30578173
CTTGCCTAGTTGACAGCTTTTGCTTTTGATATCTGCTTTTATGACTCTATTGACCGTAGGCCAACGTTTGACTTCCTGGAAAAGAGTGATAGCGCCCCGT
CTCGGCCGAAATCCATGCGAATGCACGGAAAATAGAGGATCAAATAACAGGTTCAATAAGTGGGCTAGTCCTAGCCCTCCATTACGATCCTCTCTCACCT
CTTCTTTTTCATTTTGTGGTGGATGCTTTAGCTAACATACTGGAAACAGCTAAATCAAATGGGGTGATTCATGGGCTTGTGCCACACCTAGTGCCTGTTT
CCTTACCTGCTCTGATTCTCCTTGGCCCCGCTCCGGGTTGATGACAGCTACAACCATCCTCCCTGTTTTTTCTAACCAGCTCACTATCCGAATTCCGTTG
CTTGTTCTTTCGAATGGGAGTTGACTTTCCTTTTCTTCTTAACTCCTAACAATCATCCTAGCCCTAGTCCATCTATCTCTGAATCCGAGCTCGCCTTCAC
TCGGTCAAGGGATTTACCTCGTTCCGGGTTGATGAACCCAAACCTACAACCCTTGCTTTTCTAGATCCGGGTATCTCCATTTTCGTAACCAGCTTGCCTT
CTATCTCCACCCACGAATCGAATTAACCCGATAATCCGTAGTTGGCAACCCCTGTCAATGTATGTTTGATTTGGGAGGCTACCAATTCTGGAATTTCTTC
TCGAGACATCCCCGTCAGTCAACTTCTCTTCGGGATGGGTCGTTGGTTTTTGTGGAGATAATGTGTCAGCCATGGTAGAAGTAGCTCCCTGAGTAGGCAT
GAGCGCCCGCCTAGATGAAGGGATTTTCTCATCTTGAGGTGTCGGGAGGAGTAAAGGAGATTGACTCTTCTCTGTCATTAGCCTTTTTATTGACACTAGC
TCTTTATATAGTAATTTATTTTTTGAGTATCGTATCGGTAGGCACAGATCATTGGTATTGGATATATCGTTAGGTTGTGCTGAGTCAAATCAGCTCCGCT
GATTTTTTTCCGTTGCAGAAAAGAGACCCCTTACCCTTTTTTTAGAAAATGATGAATATGAAGTCCGGGAGGCTGCGGGTACTATGGATCCTCTGACTCC
CAATCGGGTTACCTTCCCGGGTCTCGCCGGTGTTGCCTGTAGGTCGTGATGTGCCTCGAGATGGCCGTCTCCTGTCTCCCTGCTCGTGGGGAATCCGCTC
CTGGGGCGTCGCTCTGCTGCGTCTGGCCCGTCCTCTAGGCACCTTTGGGGGGCAGGGAGTGTGACAACGTACACGCTTCCCTTTACTCCATAGGGCCTTT
TCCTCAGTTGCAGGGTTTGGTGGCCCGAAATTGACTTGGCTTCGCCAAAAGGCCTCATCTCCAAAGCCCGGCTCGCGAGGCGTCCCTCTCGCTGTAGGGC
GGAGCCCCCTCGCCTCGCTCTTGTGACATGCTATGTTTCCCTTCTTCCATTCTCAAGTCAAGGGTGAGTCCCATGCGTCAGTTTGTGGATCGCGGTCTCA
CGCACTAATCTCTACAGGTGCCCATAGTAGGCCGGCCGCCCTACCTAAACCAATCATCATATCGGTCCCTAGGCCCCATTGCTGGAAAGGCTCGGCTTCA
AAACCGTACGTGGAGCTTCCGCCTCATACGGCTCCTCTAGGGATGGGGGTAGGCCCAGCCCAGGCTTGTGCGGTTAAGGTTGTTGTACACGCCCTCAGTT
GAGCATTCAGTTAGAGACGGCGATCGTAGGTTCGCCGGAGGAGAGGGTGTTGCGAGCAAGATTGCACAAACAAAGCCCTCCTGCCCGCAGCCCTATTCTA
GAAATTTGGCTGGCTACGTTACTTATAACCGCAGAACGAGCAATGAATCCCCAACGACAAACGAACAAGGGGCGGGGCATTTTCGGGGAGTAGCCCCCTT
CAGAAGAAACTTCCTGGCACATACATTAAGGGAGCCATCGAAAGGTGACTGAAACACCTGAAACGGGGACTACCCGAGCTAATGATAGAGGCAAGAACAC
TTTCCGGCCAAGTCCCATTAATTGATCATAACGATATCGTGGAAATGCTGCACGGACCCATATATATAGAAACAGAAAAAGAAGAACCTTGATACTAAAC
CAGATCGAACAAGGGATCTTCTTGGAAATGGGAAGATCTAGGATAGGCGGCCAACCTCCTGGAAAGAGCGATGTGCATAGACCGGGTGAGTAGGGATGCA
GCTCCGTGGACCGCTCGTCGGGCCTGATAGGTGGTGGTATCACACCCTTCTCAAAGGAACCGTACGTGAGACTCTCGCCTCATACGGCTCCGTCCTGGAA
TCTGGACCCCCCCCTTTCCTTTGACCAACGGGTCCTCGAACCCATGGGGGTTATGAATCATTCATTCATTGATTGATTCAAGGTAGCTTTAGCCATTGTG
GGTAGAAGCTAGTCGCCAGAAGCGAAGCGATCTTCCGGGCCGGAAAGGAGGCCTTTTTCTGACGCGTAAGCTACCGCAAAATGAATGAAGGAAAAAGGCC
TCAGGATTAGAAAGACTAAAGAGGCATGGAGGGCCGACTACAAGACTACGACTACAATACAAGCCATGAGCGATAGCGAAGCCTGAAGGCTTTTTTTCGA
AAGCCCCACAACTAGCTATCTTATAGCAGACAACTAAGGCAAGCCTACTCAACTAATCTCATGTAAACGCCTGTTCGCAAAAATCCAAATAGAAAAAGAC
AACTACTTATTAAACATGTAGTTGAGTGCTCCGTCGTTGTTCGGATCTTGACCGAGCCCAAGCTTCCCAAGCTCTATGCTGTTTGGGAACTCCGCAAGGG
TCTTACCACCTTCTTGATTGACTATATTTGAGTCTTTGGGGTACTTTGGGATTATATTCCGCGCCGAAGATTTGTGCTTGTGGGCTAGGGTGAATATAGC
GGACCAGCGGATCTGGTAGTTGACAATCGTTCGGACTTGGTAAAGGTTGTCGCAGCACCTGTAGTAGGACAGAGGACTTATCGCGATGCCCGCGGACCAA
TTTACTATGTCTCTGTCGCTGACGTTGGTCAAAGAGGCCACGTGGATTGGCCTGGGTCTTCTTCGGCTAATGAGACCTCGATCCCGAAGCCTTCGGAGTA
TCTTTTTGATAGGCGCCTCTATCTGTATGGGGAATTCGCTGCTGAAAGATCCCGCCCAGTGCCCCCTTCCTTCCCCCGCCGCCTTCCGACCAAAGGGAGT
ATACAATTTTGTCTTCAGGACACTCATGCCCGATCGTGAGACTGCCTGTTGAACGCCTGATGGCACCTTGCTCTGACCTGAGCTATGCAACAACGGGATC
CCCCTTGATCTTTGCCGGATGTGCTTGACGGTCCCCCATAATACGCTAACTTGGGGACTTTTTAGTCCATTTTTTCCAAGAGTCTCCGCTAGTTG