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Detailed information on CNT30578158

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690859	Oryza barthii	Oryza sativa	27.79	16.02	87.23	274	forward
CNT30555490	Oryza barthii	Oryza glaberrima	42.7	87.71	100	421	forward
CNT3067339	Oryza barthii	Leersia perrieri	28.4	23.22	88.21	280	forward
CNT30597075	Oryza barthii	Oryza meridionalis	35.8	55.59	86.69	353	forward
CNT30371235	Oryza barthii	Oryza glumipatula	37.32	44.23	92.12	368	forward
CNT30106461	Oryza barthii	Oryza longistaminata	59.03	24.86	90.89	582	forward

Expression of CNT30578158

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHRSTWLPSTEVHFSGLMDITMCMHTTPKHTIICINQESCYDVISVPF*

>peptide 2 (35 aa)
LILSSYLKLLRLNRTMIISNYACIQNSFYDGFTEH*

>peptide 3 (43 aa)
MLECCVILELAQVGSLVLLHKFLLLAVELLFDSRSRVSETICY*

Sequence

>CNT30578158
ATTGATCTTGTCTAGTTATCTTAAGCTGTTGAGGTTAAATAGAACAATGATTATTTCTAACTATGCATGCATTCAAAATTCATTCTATGATGGCTTTACT
GAACATTAGTTTATAAAACTATATGCAGATATAATCCTTAACTCAAATACACTTGTAGATCATCCAAGATAATTCTTGCTGTCAACTATGCACTTAGATG
GCTGATCTATACTTGAATTATCCTACTAAGAGTCCATTAAATTTTAGATGATACTATCTTGTCCAATTACTCATGAAAATTATGTCTTTCTTATTGAACT
AAGGATGCATATTCAGTAATATAACCCCAACACCTAGTACTAGTATATGCACAGATCAACATGGCTTCCATCTACTGAGGTTCATTTTTCAGGTTTAATG
GATATAACTATGTGCATGCACACAACTCCTAAACATACTATTATATGCATCAACCAAGAATCATGCTATGATGTGATTTCAGTTCCATTTTAATCTTCTA
ATTACCTGCCATGATTTTTAAGTGACTGATATGTGTTTCCCTTCTCTGGTTCTGCAGTTGCTCCTCTGGACTCTGATTCAAAGATTCTCCTGATGGAGCT
GTTCCATTTTTGCAATGCCTATGGTCCTGCTGGTGTGGAGGGAACCTGAACTTGGAACTTCGATTTTTTTGGTGCTGCAAGTGTTTTCAGGTGTTTGTTG
AACCAAAACTGGGTATGCTTGAATGTTGTGTGATTCTTGAACTTGCACAAGTTGGTAGCTTGGTTCTGCTACACAAATTTTTGTTGCTTGCTGTAGAACT
ATTGTTTGATTCTAGAAGCAGAGTATCTGAGACAATCTGTTATTAGGTTGAATCTGAGATAAACTATTGTTTGAATTTTGTTGTATTCTGTTTGTATCTA
CTATTAGTTGAATCTGAGATGGTATCTGTTATTAGGTTTGAATCTGAAATGGTATGAGAAATTGGATTGAATTTGTTGGGCTCAAA