Detailed information on CNT30578125


BLAST search results

BLAST vs Swiss-Prot:
sp|P41095|RLA0_ORYSJ, E-value = 6e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671999Oryza barthiiSetaria viridis22.4319.4396.7261forward

Expression of CNT30578125

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MRPTFPYKQQEKQVKKNRGVESRHVHGKEKKKKEEEGELTTRRGMSSRKSLL

>peptide 2 (74 aa)
WGPEKNRQDKYCIEHRLKANLVLGDLFADLLEVTLGEDETNVSLQTTRKTGQEKPWSRVEACTWERKKKERRRR*

Sequence

>CNT30578125
GCTGGGGTCCTGAGAAGAATAGGCAAGACAAATATTGTATTGAACACAGATTGAAAGCCAACCTTGTACTTGGCGACCTCTTCGCGGACCTCCTTGAGGT
CACCCTTGGTGAAGATGAGACCAACGTTTCCCTACAAACAACAAGAAAAACAGGTCAAGAAAAACCGTGGAGTCGAGTCGAGGCATGTACATGGGAAAGA
AAAAAAAAAGAAAGAAGAAGAAGGTGAACTTACGACGAGGAGGGGCATGAGCTCGAGGAAGTCCTTGTTGCC