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Detailed information on CNT30578120


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y618|YCX1_CALFG, E-value = 5e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677883Oryza barthiiSetaria viridis77.7830.0398.66448forward
CNT3021516Oryza barthiiCitrullus lanatus78.1224.4792.67450forward
CNT30406883Oryza barthiiBeta vulgaris17.5339.386.14101forward
CNT30524944Oryza barthiiPhaseolus vulgaris77.4344.7890.58446forward
CNT30300194Oryza barthiiTriticum aestivum77.7821.2998.44448forward
CNT30220990Oryza barthiiHordeum vulgare36.9816.8190.14213forward
CNT30384312Oryza barthiiTriticum turgidum25.873.4199.33149reverse complement
CNT30509374Oryza barthiiSolanum lycopersicum19.445686.61112forward
CNT3018187Oryza barthiiZea mays26.3941.9995.39152forward
CNT30230544Oryza barthiiAnanas comosus20.1423.9293.97116reverse complement
CNT30355468Oryza barthiiLactuca sativa21.189.98100122forward
CNT30416238Oryza barthiiPapaver somniferum45.6634.3396.2263forward
CNT30100515Oryza barthiiOryza rufipogon26.2259.4589.4151reverse complement
CNT30115844Oryza barthiiOryza nivara20.4913.5596.61118forward
CNT30726897Oryza barthiiLupinus angustifolius50.6962.3984.93292reverse complement

Expression of CNT30578120

Peptides detected in this lncRNA

>peptide 1 (51 aa)
FSAVPRRDMSVKEVQNPFSFIRAKTNHLFFGFLTPYCRGSMRSSMEFSLLT*

Sequence

>CNT30578120
TTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTTCAGAATCCGTTTTCTTTTATAAGGGCTAAAACGAATCACTTATTTTTTGGCTTTTTG
ACCCCATATTGTAGGGGATCTATGAGATCGAGTATGGAATTCAGTTTACTCACTTAAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAA
TCCTGTATTTTCCATATCCATACCATCAAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTA
TTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCCCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGT
TCCGAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCAC
ATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACTCATGGGAAATCAA