Detailed information on CNT30578115


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555927Oryza barthiiOryza glaberrima96.0510097.41192forward
CNT30593965Oryza barthiiEragrostis curvula4.5920.2894.7457reverse complement

Expression of CNT30578115

Peptides detected in this lncRNA

>peptide 1 (94 aa)
EIDPVALAARLLRPAAPAAFLPPPAPSLRRRRWCSVAGRHHHRRRCAAAPFSAAVRWIDLQSSSQRLGAGQEEQRSQGIGRKRGKVWRVPTLED*

>peptide 2 (54 aa)
MALTLCYLFVFRPIFKFMTLFMFHYSGCSVYIIQEPCVAMGVQFGSLFIILEKR*

>peptide 3 (57 aa)
DRSCSPSRPASAPCRSCRVSTTTGAVSTPPPLVQCRRSPPPPSPLCCCSVFCCCSVD*

>peptide 4 (31 aa)
MHKSCVCFTSLRLYLLSILYSLLCLIWFLGT*

>peptide 5 (46 aa)
MLLIRVSTHIQIHDVIHVSLFRMFCLHYSRTMRSHGSAIWVFIHYP*

Sequence

>CNT30578115
GAGATCGATCCTGTAGCCCTAGCCGCCCGGCTTCTGCGCCCTGCCGCTCCTGCCGCGTTTCTACCACCACCGGCGCCGTCTCTACGCCGCCGCCGTTGGT
GCAGTGTCGCCGGTCGCCACCACCACCGTCGCCGCTGTGCTGCTGCTCCGTTTTCTGCTGCTGTTCGGTGGATTGATTTGCAGAGCAGCAGCCAACGACT
GGGGGCAGGGCAGGAAGAGCAGAGAAGTCAAGGAATTGGGAGGAAGAGAGGCAAGGTGTGGAGGGTTCCAACGTTGGAGGATTGAGTCAGAGTATCAAAG
GAGTTAAGGCAAGTATAAGACGGACTTATGTGATGGACAAACTGAGTTGTTTTGTTTGGCTTTACTTGTATAATTATTATTCAATTGCTTGATATTACTG
ATTGTATGGCTCTGACGTTATGCTACTTATTCGTGTTTCGACCCATATTCAAATTCATGACGTTATTCATGTTTCATTATTCCGGATGTTCTGTTTACAT
TATTCAAGAACCATGCGTAGCCATGGGAGTGCAATTTGGGTCTTTATTCATTATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGTAATGCTA
AGAGGATATTCACACCTGCCCGGGAGGGAACTACTATCTTTTGACTTCTTTGGTTTAAAATAAAATAAATCCAACCCTTCATATTGGTTTCTTAATGCAT
AAATCATGTGTATGTTTTACTAGTTTAAGATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGACATCGAT
CGGCATGGGGCGGGAGTAGCACTCTTGGACTACACATTATTATTGCACACAACTGAAATTTAGTTTTAGATTATACTTTGCTCAGCAACTTGTAAGGGTC
ATTGAAGGTTCTTATTCTTATTTTTCACGTGGGATTTGTGGAGCTACGATGGTCTAGATTGTGTGAATTATATCGGTATTGACTTTTCTTATACTACCTG
TCGTGATGTCCGTATTTTTAGGGGAGACTCTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTTGAGTATATTTTGGTGTGGCATTCTAGGTACGTGG
TTAACTAGAGTGTTACAGACTGTTGGGCGGTTTCTCCGACCGTCCATATGGGTAAGACTGTTAAAATACATGAAAACAACTGCATGTAAAAAATACATTT
CCACGTGCATCTCCTTGAGGTGAGTGTTATGTACATTTTCA