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Detailed information on CNT30578100


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001230, E-value = 4e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555880Oryza barthiiOryza glaberrima56.5360100459forward
CNT30111180Oryza barthiiOryza longistaminata1738.44100138forward
CNT30117818Oryza barthiiOryza nivara94.3381.5898.56766forward

Expression of CNT30578100

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDVLQYCVVFSSLLCSEQPVGNDVHSQAILLLLRSVHLR*

>peptide 2 (36 aa)
MYSSTVSFLVRCCVLSSQLATTYTVKPFCCCFVLST*

>peptide 3 (74 aa)
MSNNKTSAVSSSAAGIMSRSLLQSSTTTDDEHVTEMLLHWLLLPACTAAACRSLLLLGLWQWLSVLICDASTTT*

Sequence

>CNT30578100
GTTTTCTGGTGGTTGTAGAGAGAAGATATATGGAGACCACAAATTGTCCCTCGTTACTGGTCCCTGAATAGGGACATGCTTGCTTTGACTCCAATGGAAC
GCAATCAATTGTTCCAATCGGCTGGCCGGCAGTAACTGGGATGTTTTACTCCATCGAAAACACGGCGTGACCGTGCGAGTCAAGAAGGAATACAGCCCTT
CTGTTCATTTTGACAGCAGCTCGGATGGATGTACTCCAGTACTGTGTCGTTTTTAGTTCGCTGTTGTGTTCTGAGCAGCCAGTTGGCAACGACGTACACA
GTCAAGCCATTCTGCTGCTGCTTCGTTCTGTCCACCTAAGGTAAAACCATAATGGAGCTGATTTGAAAAGAAAACTACTGACGACGAGGCGACGAGGATG
GATAGATGGATCAACTTTAAAAATAAATGAGATGTGCGTGAAACATCTCGTTCTTTTGGTGATGTCCTGAAACGAGTCATGTCGAACAACAAGACATCAG
CGGTCAGTTCATCAGCAGCTGGCATCATGTCAAGAAGCTTATTGCAATCCTCAACGACGACTGATGATGAACATGTGACGGAGATGTTGCTGCACTGGCT
GCTGTTACCGGCGTGTACTGCCGCAGCCTGCAGATCGCTGCTGCTGCTCGGACTCTGGCAATGGCTGTCGGTGCTAATCTGTGATGCTTCGACGACGACA
TGATCATCAGCTAATGCCGCAGGGCCCTTGCAGCAGGTATGCTGGCCGTAGTAGACAACCGTGTACATGATGGGGTGATCGCCATTGTAGCTGTTGGCGT
GGTGCAGGTCTT