Detailed information on CNT30578099


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002304, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369462Oryza barthiiOryza glumipatula41.1990.1699.13229reverse complement
CNT30319789Oryza barthiiAsparagus officinalis23.5662.9883.21131forward
CNT30174954Oryza barthiiVigna angularis11.3324.6192.0663forward

Expression of CNT30578099

Peptides detected in this lncRNA

>peptide 1 (66 aa)
FIGYRLPSQTNTCLFCTLCPHSCAPGKNFPVGHPSQIAPGQAXLTLEFFGDWLPEKKLQLVDMSIL*

>peptide 2 (72 aa)
MLHPHPLKRDRRPRRSTPGQERPLLATSMCPVPAHVPCCVTTPGLHQTCAPCLRNCDTRARETARVGSDTIL*

>peptide 3 (49 aa)
MSFLHTLSSLVCTREEFPGRSPIPNCSRPSXLNLGVLWRLASGKEVATC*

Sequence

>CNT30578099
TTCATAGGTTATAGACTGCCCTCACAGACCAACACATGTCTTTTCTGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATTTCCCGGTCGGTCACC
CATCCCAAATTGCTCCAGGCCAAGCANGCTTAACCTTGGAGTTCTTTGGAGATTGGCTTCCGGAAAAGAAGTTGCAACTTGTTGATATGAGTATTCTATA
ATCCTATTAAGTCCTAGGCCAGGATGTTACACCCTCACCCCCTTAAGAGAGATCGACGCCCCCGTCGATCAACCCCAGGCCAGGAACGTCCTCTCTTGGC
CACGTCCATGTGTCCAGTGCCAGCGCATGTGCCATGCTGTGTAACCACTCCCGGTCTACACCAGACATGCGCACCATGCCTGCGCAACTGCGACACACGC
GCCCGTGAAACCGCGAGAGTCGGCTCTGATACCATTTTGTAACGGTCCGCCTCTCCCGGGCCCGAAGAATTTCCCGGTCGGTCACCCATCCCAAATTGCT
CCAGGCCAAGCACGCTTAACCNTGGAGTTCTTTGGANATNGGCTNNNGGAAAAGAA