Detailed information on CNT30578086


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108025Oryza barthiiOryza longistaminata76.65100.8997.71129forward
CNT30104665Oryza barthiiOryza rufipogon27.8328.5795.12410reverse complement

Expression of CNT30578086

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MGLICPRAELLDRAVHPGQHVSVDAKTVEHIYLVLIFVCIHGVRFISIFALHLHGIRMRSIERRKMVVDHGAASRNIQVSTIFNQTKWIFLAS*

>peptide 2 (69 aa)
ATASPPSKGTNPLLHHPSTSSLSLYPPPPPPSTSLPEAKVTALQESDAAALCGWQARGRAPRSKQPSPR*

>peptide 3 (37 aa)
MFWGICXSELEKFELWSLIASEPLQPLLSDLIFYIWL*

>peptide 4 (36 aa)
MGQRRGTYRCQRSLIKQSGFFLLANDLPSQYLFLLQ*

>peptide 5 (52 aa)
MDRKGKDGPSLPKVRTGRCARSDLLESANCSGETLFGMQXLEGALCLFLMDL*

>peptide 6 (49 aa)
MLLQLYIFVDVYVHFSFKSLEPLMQYPSLFLLYFCVRSYCSRYNVKXFIL

>peptide 7 (39 aa)
PPPRLPLKVQIHSCTTPPPPLSPSTHLHRRLPHHCQRPR*

Sequence

>CNT30578086
TGCCACCGCCTCGCCTCCCTCTAAAGGTACAAATCCACTCCTGCACCACCCCTCCACCTCCTCTCTCTCCCTCTACCCACCTCCACCGCCGCCTTCCACA
TCATTGCCAGAGGCCAAGGTGACGGCGTTGCAGGAGAGCGATGCGGCTGCACTGTGTGGGTGGCAAGCACGTGGCCGGGCGCCGAGGAGCAAGCAGCCGT
CGCCCAGGTAGCTAGCAGGCAGGACCACAGCACTGCAGCAGTTTCTAGCTGAGCTTGGGATCCTGTTTTGTCTTGTCATAAGCTGATTTGTGATTTGCGA
TTTGTGATCCCTGATTTTGTGGATNTGGGAATTGAGAATATGGATAGAAAAGGGAAGGATGGTCCATCCCTGCCAAAGGTGAGGACTGGGCGCTGTGCAC
GGAGCGACCTTTTGGAAAGTGCTAATTGCAGTGGGGAGACACTCTTCGGGATGCAGNGGCTGGAGGGGGCATTGTGTTTATTCCTGATGGATTTATAAGA
TTGTTATTCCATTAGTCAATATTGATCTGCATCCTTCTAAGTTNTTATATGATGAGAANAGAGTTGAAATGTATTTGAGTTCTTGTTTCAGTGCTTTTTA
TATTAGTATAGATAAGATCGTNGTTTTCTACGCAGCATTCCAACTTAAGCAGTAAGTACTTTGGTTGTGTCAGGTTGACTTGGCCAGAAGGAAATAGTCA
TATTTTGTAAGAGTGTGATACAAATGTCATTATAGATTGTAGTAACTTTGTGCCTAACAAAATATGCCTAACTTCTGTTTGATGAAATAACTAACTGTGN
TTGGCAAGCTTATAACCTATGTTTGTGTATGGGTTTAATTTGTCCTAGAGCAGAGCTGCTGGATCGTGCAGTTCACCCTGGTCAGCATGTCTCAGTAGAT
GCAAAGACAGTGGAACATATTTATTTGGTGCTAATTTTTGTTTGCATCCATGGAGTTAGGTTTATATCTATTTTCGCATTGCATTTACATGGAATTAGAA
TGAGGAGTATTGAAAGAAGAAAGATGGTGGTGGATCATGGGGCAGCGTCGAGGAACATACAGGTGTCAACGATCTTTAATCAAACAAAGTGGATTTTTCT
TGCTAGCTAATGATCTGCCCAGCCAATATCTGTTCTTACTCCAATAAAATGATGCTTTGTAGGAATGTTCTGGGGCATATGTNGGTCTGAACTTGAAAAG
TTTGAACTTTGGTCACTCATTGCTTCTGAACCACTGCAACCTCTACTTAGTGACTTAATCTTCTATATTTGGTTGTGAATTGCTCTTCAATGTTCTAACA
TTGGTCAATGACCGAGTTAAAATGCTTTTACAACTGTACATATTTGTTGATGTGTATGTGCATTTCAGTTTTAAATCTTTAGAGCCTTTAATGCAGTATC
CATCCTTGTTTTTGCTTTATTTTTGTGTGAGATCATACTGTAGTAGATATAATGTCAAAANTTTTATTTTGTC