Detailed information on CNT30578078


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000134, E-value = 3e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555468Oryza barthiiOryza glaberrima28.9339.6599.86699forward
CNT30597153Oryza barthiiOryza meridionalis8.926.5493.95215reverse complement
CNT30104088Oryza barthiiOryza rufipogon37.3830.8999903forward

Expression of CNT30578078

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MFGSIIVLGVLINGRRHEVDIFFHGFMFVLFGFEEMKRLQGANSLETSRIF*

>peptide 2 (49 aa)
MFGHSSYSNFFKLLFILFVTYFIIYSTLSTTFCFLYLIKSLNKTSGQML*

>peptide 3 (77 aa)
MEGVFRKHSAKLQPNPYPLLPHISLGRSFSFWSSHSSLSPSPSSIEANLREREGKLAVHHPNPEVLALSHPDPARRR*

>peptide 4 (62 aa)
PSTTAEGVANPKQALAGGGLPWVAPWRPPAHRIVPPDLASQRPRLFLKSRQEEKSNQERQNF*

>peptide 5 (37 aa)
MLKFRTNCPIFSSKETSLKILQCRQSIVFNVILQATA*

>peptide 6 (40 aa)
MDPNFGSKHSLRSLLPKHHLNRAYELLPPSHNIRDFEFLL*

>peptide 7 (33 aa)
MEYKARFSGNQSNLSCRRSERLEEQSWRDDQSM*

>peptide 8 (35 aa)
LDDSGRSSQPQASARRRRPALGGTVATSRASDCAA*

>peptide 9 (30 aa)
MFIAKSFWKLTLCLVQRKVWILVEIGNDVT*

Sequence

>CNT30578078
CCCTCGACGACAGCGGAAGGAGTAGCCAACCCCAAGCAAGCGCTCGCCGGCGGCGGCCTGCCTTGGGTGGCACCGTGGCGACCTCCCGCGCATCGGATTG
TGCCGCCTGACCTTGCGTCGCAGCGGCCGCGCCTCTTCCTTAAGTCGCGCCAGGAGGAAAAATCTAACCAAGAACGGCAGAACTTTTGAGCAGACAAAAA
CAGAAAAACTATTCGAGAATTAGAACTCAACAAAAAGGAAGATTCAGTTCAGATGTTCGAGCTGCAAACCTGAGAGCAGCAAGACGAATCTTTTGAGCCT
AATTAAGCCGTCATTAGCACACGTGGGTTCCTGTAACACTTATGGTTAATCATGGACTAATTAGGCTCAAAAGATTTGTATCGCGATTTACATGCAAACT
GTGTAATTAGTTTTCATATTTATCTATATTTAATACTTTATACATGTGTCCAAAAATTCGATGTGATGTTTATTGCGAAAAGTTTTTGGAAACTAACGCT
GTGTCTAGTTCAGCGTAAAGTTTGGATTTTGGTTGAAATTGGAAATGATGTGACTTAAAAGTTGTGTGTGTATGACAAGTTGATGTGATAGAAAAAGACT
GAATTATGGATCCAAACTTTGGATCTAAACACAGCCTAAGGTCCCTTCTTCCCAAACACCACCTAAACAGGGCCTATGAATTACTCCCTCCGTCCCATAA
TATAAGAGATTTTGAGTTTTTGCTTTAAATGTTTGGCCACTCGTCTTATTCAAATTTTTTTAAATTATTATTTATTTTATTTGTGACTTACTTTATTATC
TACAGTACTTTAAGCACAACTTTTTGTTTTTTATATTTAATAAAAAGTTTAAATAAGACTAGTGGTCAAATGTTATAAGAAAGAACTTAAAATCTTTTGT
ATCGTGGGATGGAGGGAGTATTTAGAAAACACAGTGCAAAACTGCAGCCAAATCCTTATCCTCTTCTCCCCCATATCTCACTCGGTCGGTCCTTCTCGTT
CTGGTCGTCTCACTCATCGCTCTCCCCTTCCCCCTCATCCATTGAAGCTAACTTGAGAGAGAGAGAGGGAAAGCTTGCCGTCCACCATCCAAATCCGGAG
GTATTGGCCCTGAGCCATCCAGATCCAGCGCGGAGGCGGTGAAGGTGGCAGGGGCACGGGTAGATGATGCAAGATTGAAAACAGCAAAGGTGCGGACAAC
TGAGCGCTTTGTCCGGCGTTGTTGCAATGCATCCAACTCCAAGATGAGAGGGCGTGGTGGACTTGTCAACTAACCAGATCTGACAGGGAAGCGCTCGATA
GCAGTGGCTCGGCTAGCACATAGTGCTTGGGGACGACAACAACTGAAATGTGGTGGCGGCCGCCTGTTTTGATCGAATGAAGACGACAAGAAGTGAAGAC
CTCTTTGTATGCTTTGATGTTTGGGAGTATCATTGTTTTGGGGGTTTTGATTAATGGAAGAAGACATGAAGTAGATATATTTTTTCATGGTTTTATGTTT
GTTTTGTTTGGATTTGAAGAGATGAAGAGATTGCAAGGGGCAAATAGTTTGGAAACCTCTAGAATATTCTAGTGATGAATTTGTTTTCTAGGTTTATTTA
TGTTTTACTATCGGTAATTCTCTTATATTTATCTTAATCTCTAACTCTGTCACGTGGCCTAATAAGCCCCTTTTTTTCCCTTTTGTAATTCGTTCTGCCC
CTATATAAGGCACTGGATGTGTTTTGTAAAGCAACAATGCAAGTAAATATTTCAGGATCGATTGGTAATAAGAAGATACTTATGGATTAAATTCAGTGCC
CATGGAAACTGTTGCTAATCATTTCGCAGGACAAATAGGCTAGTAAGCAGTAGTAATCTAAAAATGAAGTTGAATCAGCACTAAACAAGGGCAGGAAAAA
TCTAAAATATGCTCGCTCATGTTGAAATTCAGAACTAATTGCCCAATATTTTCAAGCAAAGAAACTTCACTGAAAATTTTGCAGTGTCGACAGTCTATTG
TCTTCAATGTGATATTACAAGCCACAGCATAAAAATTTGTACAGTTGAATCAGCACTAAACAACAGGAAAGTTCTTCCTCACTCTTGGGACTGATAGGTG
ATAGCTGATGTTCTGAGCTATGCTCGCTCGAAATCATATTCAGAACTAATTGCCCAATGTTTTCAAGCAAAAAGACTACTTGATACAACGAGGTAAAAAT
TCACACAAAGAGAAAGGCCAAATTTTCCAGCAGACATAATCAGAAAAGTTTGATCACAGCTACAAACTAGCTAGATGGAGTACAAAGCAAGATTCAGTGG
AAATCAATCTAACCTGAGCTGCAGACGATCAGAGCGTCTAGAAGAGCAGAGCTGGCGAGACGATCAGAGCATGTGAGGTTTAAGATAGGCAACGAAGAAA
ATATAAAGCACAAAGC