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Detailed information on CNT30578077


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555464Oryza barthiiOryza glaberrima45.9940.97100390forward
CNT30106800Oryza barthiiOryza longistaminata30.4221.2599.61258forward

Expression of CNT30578077

Peptides detected in this lncRNA

>peptide 1 (58 aa)
GWWLVGFIRGRGRGGEGPIDPDPSGPFDRVGAMRREEERRLVEWLPFAKALPPRGWIW*

>peptide 2 (32 aa)
GGGWLVLYEGEGEEGRAPLTRIPLGHLTELVR*

>peptide 3 (67 aa)
MLAASEFTHPAVTTTVSLQVYYVNFMAILFVVWLSLYSEMVMMVAGLFELVLLQYLNSKEEGSFFLKK

Sequence

>CNT30578077
GGGTGGTGGTTGGTTGGTTTTATACGAGGGAGAGGGAGAGGAGGGGAGGGCCCCATTGACCCGGATCCCTCTGGGCCATTTGACCGAGTTGGTGCGATGA
GACGAGAGGAGGAGCGGAGGTTGGTTGAGTGGCTGCCATTTGCAAAGGCCCTCCCCCCACGGGGCTGGATTTGGTAGGAGGGGACACGAGCTAGCCCAAG
GTTTTCAATTGGTCCAAGGGATTGCTGTTGCTTGATGGAAGAAAAAGTCTGAGTTGGAAACAAACTTCAATGGCTCAACACCCACTTCCACGTTAGTAGA
TTTTTTGGGGCACACATCAGCAGCACATGGCGATGCTTAATGGGCTCACCCACCGACATTTTTCTAGCACCCCACGCTAGCTCCCCCTCCTTTCTGAGAT
TCTAGAAAACCCAGCAGCATGTCTTTGTGTGTGATTGTGCAAGAAAGAAAGCAAAGAAAGGGAAAGGGTGAAGCAAGAAAGGGGAGAATCTGATCAATTT
GGTGAGCTACCCCCTCCTTCCTTCCCGCTCCTAATTCCCCTCCCTCTTGATATAGAGCAAGTTGTGCACTTGTTTAACCCTTACTTTATTCTTGGTTGGT
GTACATGTTGTAAGGTTAGGGTAGGCCGAGTATTCCACGTACTCATGCTTGCTGCATCGGAATTTACACATCCAGCTGTTACGACAACAGTATCATTACA
AGTGTATTACGTCAATTTCATGGCTATTTTGTTTGTTGTTTGGTTAAGTTTGTATAGTGAAATGGTCATGATGGTGGCAGGACTATTCGAACTAGTCTTG
CTGCAATATTTGAATTCTAAAGAGGAAGGTTCCTTTTTTTTAAAAAAA