Detailed information on CNT30578064


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005657, E-value = 4e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696596Oryza barthiiOryza sativa70.7823.8989.39264reverse complement
CNT30596657Oryza barthiiOryza meridionalis66.7645.690.76249reverse complement
CNT30101245Oryza barthiiOryza rufipogon79.8919.0893.62298forward

Expression of CNT30578064

Peptides detected in this lncRNA

>peptide 1 (88 aa)
SLTHSSQAIGTSSQVHKKRLSTASIWYRIGSEVPSNSTQVAAEDSNKSQNHKTKASGAITPQGQTNRARAKLKAAEDHSLPLSPPAEQ*

Sequence

>CNT30578064
CCAGCCTCACACATTCATCGCAAGCAATTGGAACATCATCACAAGTGCATAAAAAGCGGTTAAGTACAGCAAGTATCTGGTATAGAATAGGGTCCGAGGT
CCCATCTAACAGCACACAAGTAGCAGCGGAAGATTCAAACAAAAGCCAGAATCACAAAACAAAAGCCAGTGGTGCCATAACTCCACAAGGGCAAACCAAC
CGGGCAAGAGCCAAGCTGAAGGCAGCAGAAGATCATTCCCTGCCCTTGTCGCCCCCGGCAGAACAGTGACCACACATGAAGCACAATTCTACGCCATAGT
GCTCGCCTTCCCGCTGAGGGTAGTCACACTCAGGCTCTGGTTCCGCTTCAGCGCTCTCCGGAATCTCTAAATC