Detailed information on CNT30578054


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191619Oryza barthiiSecale cereale29.694.4886.7668forward
CNT30307365Oryza barthiiTriticum aestivum29.693.0586.7668forward
CNT30226410Oryza barthiiHordeum vulgare35.375.8185.1981forward
CNT30400498Oryza barthiiTriticum turgidum29.693.5486.7668forward
CNT30439044Oryza barthiiAegilops tauschii27.513.0487.363forward
CNT30256422Oryza barthiiAvena sativa23.583.4488.8954forward
CNT30670123Oryza barthiiTriticum dicoccoides29.693.6686.7668forward

Expression of CNT30578054

Peptides detected in this lncRNA

>peptide 1 (42 aa)
VPTRVFVVMVLSSVMNLDKPKSAIFGTMLLSSKILAGFRSKW*

>peptide 2 (30 aa)
PNKSFCSHGFVFSDEPRQTKICNFRHHVVV*

Sequence

>CNT30578054
GTCCCAACAAGAGTTTTTGTAGTCATGGTTTTGTCTTCAGTGATGAACCTAGACAAACCAAAATCTGCAATTTTCGGCACCATGTTGTTGTCTAGCAAAA
TATTGGCAGGCTTTAGGTCCAAATGGTAAATAGGTGGGTTCATTTCCACATGGAGATGTTTTAAACCCTCGCATGTCCCTTTAATAATTTTGTACCGTAT
GGGCCAGTCAAGACCATCATCTTCATCTG