Detailed information on CNT30578036


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL2|NLT2B_ORYSJ, E-value = 2e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676294Oryza barthiiSetaria viridis38.2644.3690.35114forward
CNT30523932Oryza barthiiSetaria italica54.3646.2988.89162forward
CNT30444120Oryza barthiiAegilops tauschii27.8518.7886.7583forward
CNT30136219Oryza barthiiLolium perenne38.5919.187.83115forward
CNT30682526Oryza barthiiTriticum urartu27.8515.9687.9583forward
CNT30367564Oryza barthiiSorghum bicolor29.5315.396.5988forward
CNT30104005Oryza barthiiOryza rufipogon104.3698.7395.82311forward
CNT30582166Oryza barthiiEchinochloa crusgalli25.1711.969675forward
CNT30498573Oryza barthiiDigitaria exilis32.2120.1391.6796forward
CNT30117813Oryza barthiiOryza nivara101.3473.4893.71302forward

Expression of CNT30578036

Peptides detected in this lncRNA

>peptide 1 (84 aa)
GAVDGGADGVGDADAALGGDAGGIAGVEAADAAGHVLEAGRHGGVDLAAADGGHGGVWARQEQSCHEGDQHQLCTGHLDLGRVC*

>peptide 2 (86 aa)
MLTPHLEGMLAALPALRPLMLPATFLRQGDTAELTWPQLMAAMVVCGPARSRAATRATNTSCARAISILVVCADDRSTCCCCWCVVL

Sequence

>CNT30578036
CTGGAGCAGTCGATGGAGGGGCTGATGGTGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCATTGCCGGCGTTGAGGCCGCTGATGCTGC
CGGCCACGTTCTTGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCATGGTGGTGTGTGGGCCCGCCAGGAGCAGAGCTGCCAC
GAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGATCGATCGACTTGCTGCTGCTGCTGGTGTGTGGTGCTCG