Detailed information on CNT30578031


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXP9|YCF15_HELAN, E-value = 1e-12

BLAST vs NONCODE:
NONMEST003119, E-value = 3e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Oryza barthiiOryza sativa30.7418.0897.53162forward
CNT30730495Oryza barthiiCorchorus capsularis40.0417.2484.83211reverse complement
CNT30502643Oryza barthiiNicotiana attenuata33.413.5984.66176reverse complement
CNT30543269Oryza barthiiBrassica napus24.294.3282.81128reverse complement
CNT30232463Oryza barthiiAnanas comosus21.8248.7392.17115forward
CNT30319059Oryza barthiiAsparagus officinalis33.9722.0288.83179reverse complement

Expression of CNT30578031

Peptides detected in this lncRNA

>peptide 1 (86 aa)
VGHYPKNINPTLSVSEKMSRSQKLSKSFSSIVPFIRWCLNLLKINIKCFTQNRQRLTSVERLIHSDRYEDPTTLHCQNPCSIFEDG*

>peptide 2 (38 aa)
SDTIQKISIRHYPFPKKCPDLKNYLNHFHPSYHLSGGV*

>peptide 3 (32 aa)
MRTQLRCIARIHVPYLKTVDLCASLMVQSSSY*

Sequence

>CNT30578031
GTCGGACACTATCCAAAAAATATCAATCCGACACTATCCGTTTCCGAAAAAATGTCCAGATCTCAAAAATTATCTAAATCATTTTCATCCATCGTACCAT
TTATCAGGTGGTGTTTGAATCTCCTGAAGATAAATATTAAGTGTTTCACGCAAAACAGACAAAGATTGACCTCTGTAGAAAGACTGATTCATTCGGATCG
ATATGAGGACCCAACTACGTTGCATTGCCAGAATCCATGTTCCATATTTGAAGACGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTCCTACTG
AGCCCCCTTTCTCCTCGGTACAGAGAAAAAATGGAGGACTGGTGCCGACAGTTCATCACGGAAGAAAGAACTCACAGAGCCGGGATCGCTAACTAATAGA
ATAGTACTACTAACTAATACTAATATATAGAAATAGATATCTAGATATAGGCCATAAACGATATATAGATAATCGAAATTGAAAAGAACAACTTGAAAAA
CTTGAAATATGTATACTTTCCCCGTTC