Detailed information on CNT30578017


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93XM7|MCAT_ARATH, E-value = 8e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696472Oryza barthiiOryza sativa97.9498.8197.9333forward
CNT30515Oryza barthiiZea mays29.124592.9399forward

Expression of CNT30578017

Peptides detected in this lncRNA

>peptide 1 (63 aa)
PESLCDLGNFYIDSICVYRITLFLHPQMRWMTARIRIRIRRRKLRVKKEEDVMIHEFSLVQSE*

Sequence

>CNT30578017
CCAGAGAGTTTGTGTGATCTAGGAAATTTTTATATAGATAGTATTTGTGTGTACAGAATTACACTGTTCTTACATCCACAGATGAGATGGATGACAGCAA
GAATCAGAATCAGAATCAGAAGAAGAAAATTAAGGGTCAAGAAGGAGGAGGATGTAATGATACATGAGTTCAGCCTAGTGCAGAGCGAGTGACCTCGTAG
GCCAAGAAGCAGGCGGCGTCCATGGAGCCGGAGTACTTGGGGTTCTTGTAGTCGTCCACCTGGATGACGCTCTTCACCACGTCCGTCGGGTACACCGACC
CCCAGAAGGAGGCGCCGGCGAGGCCCCCGGCCACCACCAG