Detailed information on CNT30577979


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696520Oryza barthiiOryza sativa10096.4999.5797forward
CNT30555063Oryza barthiiOryza glaberrima81.395.01100648forward
CNT3068141Oryza barthiiLeersia perrieri19.0736.4580.92152forward
CNT30596955Oryza barthiiOryza meridionalis71.8981.2895.99573forward
CNT30106908Oryza barthiiOryza longistaminata31.7410096.44253forward
CNT30103734Oryza barthiiOryza rufipogon94.3510098.8752forward
CNT30117704Oryza barthiiOryza nivara82.1897.6299.54655forward

Expression of CNT30577979

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MFHLHAHLHYHLSRHETWAKTKLCSRPSLPLLQQGILSHIWLHY*

>peptide 2 (82 aa)
MNKRRFSTHSLILVTVLAVLIVLAMPTALLGLSIGRRALGDPHGVQSTAAMQQDAQAVGPACNTNDPNVPSPCPPPLSSLSP*

>peptide 3 (36 aa)
MLKAFASFAPAGDFEPYMVTLLGDKAIRLYHENYDK*

>peptide 4 (37 aa)
MNLASRQESSCYLFSVLRSMQAVPYNLGEVLPCLRGT*

>peptide 5 (32 aa)
MPTSTIISLAMKPGQKQSYAQGLRFLCSSRGF*

Sequence

>CNT30577979
AGATAGCAAGAAGGCAAGCTAAAACAAACCAGCTAAGCATAAGGTGAAGGGTAGATAAAATACAACGGTGAAGTTAAAAGAGAAACAGAGATGAACAAGC
GAAGGTTCTCTACGCACTCCCTTATCTTGGTGACTGTGCTAGCAGTTCTAATTGTTCTTGCTATGCCAACAGCTTTGCTGGGGCTCAGTATAGGGAGGCG
TGCTTTGGGTGATCCACATGGAGTTCAATCCACAGCTGCCATGCAACAAGATGCTCAGGCCGTAGGTCCTGCGTGCAACACAAACGATCCGAATGTTCCA
TCTCCATGCCCACCTCCACTATCATCTCTCTCGCCATGAAACCTGGGCAAAAACAAAGCTATGCTCAAGGCCTTCGCTTCCTTTGCTCCAGCAGGGGATT
TTGAGCCATATATGGTTACACTATTAGGTGATAAAGCTATACGTTTGTACCACGAGAACTATGACAAGTAAACGTATAGATTAACCAACATCTGAATTGT
GACGAGAATTCGTAGGTTCTTTCAGAGAATGTTGTACCTTGTGTTATATGGTGCATGTACCTCTATATAGTTGTGTTTGAATAAAACGAAGACATGAATT
TGGCGAGCCGACAGGAGTCATCTTGTTATTTGTTTTCTGTACTACGAAGTATGCAGGCTGTACCATATAATTTGGGAGAAGTTTTACCATGTTTACGAGG
TACATAGAGGTATTGAGAAGTTTAGCTATGTAGACAATTGATCGAGAGAGGGGTAAGGTATGGGAATGAATTATTGTAACCGATAGCAGTGGAGTAA