Detailed information on CNT30577945


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696315Oryza barthiiOryza sativa10056.0296.49484forward
CNT30679789Oryza barthiiTriticum urartu38.0236.5183.15184forward
CNT30365536Oryza barthiiSorghum bicolor23.3516.5985.84113forward

Expression of CNT30577945

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VAVAVELEVDEVDHAGVAPPQRLVVALAPRRPRTARWRWRCSGAAP*

>peptide 2 (76 aa)
MRPETESAALRTHASTDDVGANVALTPVFWTVSPPRARMTLRLGCAALAAATAAGDRLAVSQYGANTPLAGAGLEDC

>peptide 3 (36 aa)
MEVAMFGCRALSSVRRRPMHSTNVSTPAPPSSLKCS*

Sequence

>CNT30577945
TGTCGCCGTAGCCGTAGAACTGGAAGTTGACGAGGTCGATCACGCCGGCGTAGCGCCGCCACAGCGGCTGGTAGTAGCGCTGGCACCACGGCGTCCTCGA
ACGGCGCGATGGAGGTGGCGATGTTCGGGTGCCGCGCCTTGAGCTCGGTGAGGAGGCGGCCGATGCACTCCACGAACGTGTCGACGCCGGCGCCGCCGTC
GTCGTTGAAGTGCTCGTAGTCGACGTCGACGCCGTCGAGGCCGTAGGCGTCGATGAGGCCGGAGACGGAGTCGGCGGCGTTGCGCACCCACGCGTCGACG
GACGACGTCGGCGCGAACGTGGCGTTGACGCCGGTGTTCTGGACGGTGTCGCCGCCGAGGGCGAGGATGACGCTGAGGTTGGGGTGCGCCGCCTTGGCCG
CGGCGACGGCGGCCGGGGACAGGTTGGCCGTGTCCCAGTACGGGGCGAACACGCCGTTGGCCGGCGCCGGCTTGGAGGACTGCG