« Back to Oryza barthii search


Detailed information on CNT30577940


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696621Oryza barthiiOryza sativa91.7377.3299.87743forward
CNT30677535Oryza barthiiSetaria viridis14.255.0288.7115forward
CNT30283765Oryza barthiiTriticum aestivum25.9346.9885.24210forward
CNT30384857Oryza barthiiTriticum turgidum11.8522.6488.5496forward
CNT30435716Oryza barthiiAegilops tauschii29.0130.6886.38235forward
CNT30239672Oryza barthiiAvena sativa39.1443.4885.8317forward
CNT30679142Oryza barthiiTriticum urartu3023.8286.01243forward
CNT30361414Oryza barthiiSorghum bicolor29.0162.583.4235forward
CNT30596968Oryza barthiiOryza meridionalis55.9310099.56453forward
CNT30149646Oryza barthiiBrachypodium distachyon32.2248.683.52261forward
CNT30103572Oryza barthiiOryza rufipogon79.0160.0999.69640forward

Expression of CNT30577940

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MMYHWQVFYMVDQWLVFHMVDQWQVFHMVDH*

>peptide 2 (87 aa)
MAGLPYGGSMAGLPYGGSLGGPPYGGLLADRPYSMNSLLGKISTGGPSKGAKGVGLLEELPSLSVLVLSLEAISVRAPLAIAGSPAT*

Sequence

>CNT30577940
CCTCNGTATAATCATAAGCATTGGAATTTCCAGCTCTGGTGATTCCTAATTGTTGCACATTACTATTCCCAGCTCTCGAGAGGCCTAATTGTAGTGTACC
CCTACTAGAGTACCTATCAGTAGGTACTTGGTCAAGATAAGAACGGCGGGACATATAATCGGCACCAGGACTAATAGATGAGGGCAGTTCTCTATTAGGC
AAGCGAGTAGTTGCTGCATATCTGTCGTATGAAGCAGATGGTGTAACTTTGCTATTTCCACTAGGGTACTCTCTTTTAGAGAAGTACTCTACAGGATACG
CAGTGTAAGGATCACGAGGCCCATCATTGTTCAACCCTCCATATGATGTATCATTGGCAGGTCTTCTATATGGTGGATCAATGGCTGGTCTTCCATATGG
TGGATCAATGGCAGGTCTTCCATATGGTGGATCATTAGGAGGCCCTCCATATGGGGGACTATTGGCAGATCGTCCATATAGCATGAATTCCCTGTTAGGC
AAGATATCAACAGGAGGACCATCAAAAGGGGCAAAAGGTGTCGGATTATTGGAAGAACTTCCATCTCTGAGTGTCCTAGTTCTAAGCCTCGAAGCAATCT
CTGTCAGGGCTCCTCTTGCAATAGCTGGAAGCCCAGCAACCTGAAAGCTTGGAACAAATGTAAAAGCACAATGAAATGTTAACAAGTAAAAACTGTAGTT
ATAAAGGTAATATATGGATCTCTGGTGTAGGTATGGCCAAATAAATTACCTGCACAAGCTCCTCATCAAAAGACAGGTACTTAGGTTTATCTGCTTTTGA
GTAGACTCGG