Detailed information on CNT30577922


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001079, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596220Oryza barthiiOryza meridionalis8.824.0185.99157forward
CNT30604686Oryza barthiiOryza punctata4.0423.7687.572forward

Expression of CNT30577922

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MRSASELTHSPSAITSSDEFKTRQGATNSCLSGKDHTRWYKYCDQARSKLQMAMTASYPTPGTLISYVNSMYKINVSQICANPLPKGILISS*

>peptide 2 (55 aa)
MGIHSSWSGCRHARVTEKPSRDKSHVLGASWSVGLKAYIHCSVSKLNYSNSRARG*

>peptide 3 (46 aa)
MPCCYQVRVEDDGLGTIGSPVVACGVRWTTAASLPLFYLVLWYFVL*

>peptide 4 (39 aa)
MSATRHTQTFCENQNLIQQNYFDWDDTNRIWVVLGTVSR*

>peptide 5 (39 aa)
MDHRCFASAVLSSTLVFCFVSDHAWSISGPNEVTLVLLL*

>peptide 6 (31 aa)
MKCEGKPNQAGLGEVDEPWIITTSTTMLFFS*

>peptide 7 (34 aa)
MICGWRHERHPPYTNLLRKPKLNTTKLFRLGRHE*

>peptide 8 (30 aa)
MWFNDVKTIYMYNIISDLGSARTPLTTGSR*

>peptide 9 (31 aa)
MQINQAILEPLCALDSFCSSGLLSTYVLTLT*

Sequence

>CNT30577922
GGTAGACATACGTACACTCCATATTTATGCTAGATGATTATGGATGTGAGATCACTCGATGTGAGTGATTGATGATTTGTGGGTGGAGACATGAGCGCCA
CCCGCCATACACAAACCTTCTGCGAAAACCAAAACTTAATACAACAAAACTATTTCGACTGGGACGACACGAATAGAATATGGGTGGTTCTGGGAACGGT
AAGCCGCTGACCCCGGTCAGTTAAGGACCGAGTCAAGAAGCTAAGCAGGAAACGAACCGAGTACGACCACACTTCTTGAGTGGGGTTAGACCCGGTGGAC
TAGGTTATTCTCGTGGGGTGGCACCCCAGACATGGTAGGTTCTGGACATTGGTATGGAAATGTGGAAGTATGTGGTTTAATGACGTCAAAACTATATATA
TGTATAATATAATCTCTGATCTCGGGAGCGCCAGGACTCCCCTCACAACCGGCTCGAGGTAGGAATGTGGCACCGGGGGTGCAATGGGGATTCATAGTTC
TTGGAGCGGGTGCCGCCATGCAAGGGTAACTGAAAAACCGAGCCGTGACAAGTCTCATGTGTTGGGTGCGTCATGGAGTGTGGGATTAAAAGCGTACATC
CACTGCAGTGTGAGTAAATTAAACTATTCGAATAGCCGTGCTCGCGGTTAATGAGCGCCGGTACCTGTACTACCCTTGACTAGACTCATAGATTTTAATA
CTACTTAGAGTAGATATGAGAGACATGAGAAACTTGCCCAAAGAGTGAGAAGGTTAGTATAGTAGAGTTGGTATAGGATGAAATGTGAGGGTAAACCGAA
CCAAGCGGGGCTTGGAGAGGTGGATGAACCCTGGATAATTACAACTTCAACAACAATGTTGTTTTTCAGTTAAAACTGCTAGGTCAATAGGTTTGTGAAA
TGAATTGTGAAAACTAGCTTTATGCAAATAAACCAAGCCATACTTGAACCTCTGTGTGCATTAGATTCATTTTGTAGTAGTGGCTTGCTGAGTACGTATG
TACTCACCCTTACTTAATTAAATCTTTTAGAAATGAGTTGGAGTCGATTATATTCATGCCATGCTGCTATCAAGTGCGTGTCGAAGATGATGGATTAGGG
ACCATAGGTTCACCAGTCGTTGCTTGTGGAGTTCGATGGACCACCGCTGCTTCGCTTCCGCTGTTCTATCTAGTACTTTGGTATTTTGTTTTGTAAGTGA
CCATGCTTGGTCTATTTCGGGACCCAATGAGGTTACCCTTGTATTATTATTGTAGAAACACCTGTAAACAATGTCAGTTGTGATATTATACTGTGCTATG
TGTGTACCATCTTCTGATACAGGGAGTGGTACTGTATAACAGATGGGATTCCCGGTGTATATAACCGTACACGCGTACAGAAGTATACTGACGAGGAACA
GGACAAACGGCGAAGTGACGATGTGAACCTTCTCGAGGAACATCGTGAACGAGTTGCCATTCGAGCAGCCACATACCAGCAGGCCCTACGCCGATATCAT
GAGAAGCGCATCAGAGCTCACACACTCACCATCGGCGATTACGTCCTCCGACGAGTTCAAAACCAGGCAAGGCGCAACAAACTCTTGCCTAAGTGGGAAG
GACCATACACGGTGGTACAAGTACTGCGACCAGGCGCGTTCAAAATTGCAGATGGCGATGACCGCGAGTTATCCAACTCCTGGAACATTGATCAGTTACG
TAAATTCTATGTATAAAATCAATGTATCCCAAATATGTGCAAATCCATTACCCAAAGGTATTTTGATTTCCTCATGAAATACAG