Detailed information on CNT30577915


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93XM7|MCAT_ARATH, E-value = 8e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696466Oryza barthiiOryza sativa66.0179.6199.73367forward
CNT30522315Oryza barthiiSetaria italica39.2136.790.83218forward
CNT30555236Oryza barthiiOryza glaberrima76.4482.5299.76425forward
CNT30117741Oryza barthiiOryza nivara39.7569.599.55221forward

Expression of CNT30577915

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MLSSPSTIHQRNKSTKPESLCDLGNFYIDSICVYRITLFLHPQMRWMTARIRIRIRRRKLRVKKEEDVMIHEFSLVQSE*

>peptide 2 (51 aa)
MTLFTTSVGYTDPQKEAPARYCLIASYTPNMSAFPGTSRASVGPSPLNSPPT

Sequence

>CNT30577915
ATGCTTAGCTCACCATCAACAATTCACCAACGGAACAAGTCCACTAAACCAGAGAGTTTGTGTGATCTAGGAAATTTTTATATAGATAGTATTTGTGTGT
ACAGAATTACACTGTTCTTACATCCACAGATGAGATGGATGACAGCAAGAATCAGAATCAGAATCAGAAGAAGAAAATTAAGGGTCAAGAAGGAGGAGGA
TGTAATGATACATGAGTTCAGCCTAGTGCAGAGCGAGTGACCTCGTAGGCCAAGAAGCAGGCGGCGTTGGCGGGGACACTGCGCGCCATGGCCGGGCCGA
AGCCCTTGTAGAGGCCCTTGACGCCGTCGGCGGCGAGGATCTTCCTGAAGGCGTCCATGGAGCCGGAGTACTTGGGGTTCTTGTAGTCGTCCACCTGGAT
GACGCTCTTCACCACGTCCGTCGGGTACACCGACCCCCAGAAGGAGGCGCCGGCGAGGTACTGCTTGATCGCCTCGTACACGCCGAACATGAGCGCGTTC
CCCGGCACCTCCCGCGCCAGCGTCGGCCCCAGCCCCTTGAACAGCCCCCCCACGCC