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Detailed information on CNT30577872

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696538	Oryza barthii	Oryza sativa	88.52	102.47	97.13	663	forward
CNT30555266	Oryza barthii	Oryza glaberrima	87.05	100	99.85	652	forward
CNT30597018	Oryza barthii	Oryza meridionalis	90.52	96.03	93.22	678	forward
CNT30371149	Oryza barthii	Oryza glumipatula	95.33	98.89	93	714	forward
CNT30103764	Oryza barthii	Oryza rufipogon	92.52	90.23	97.26	693	forward

Expression of CNT30577872

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRKLRPSAQSLLLVIVLVFLVVLAMPTALLGLGAGRRVLGDSSKAQSPGMHGFNCNLC*

>peptide 2 (33 aa)
MNLVSWEASSGLFYQELRGCYCGNCSNLEVGSM*

>peptide 3 (33 aa)
MQLEVSDKEQIARLILKVYKSSLKFKNCRGNTS*

Sequence

>CNT30577872
TCCCTGGACTGTTCATATAAGACAGAGAGCAATATGCAATGCAACACCAGTTATTACTAAGAGCTAAGGTGAAGGTTTATCAGGATTCTAGAATACAACT
GTGGAAGTAAGAAACAAAGAGATGAGAAAGCTAAGGCCATCTGCTCAGTCTCTTCTTTTGGTGATTGTGCTAGTATTTCTAGTGGTTCTTGCTATGCCAA
CTGCTTTGCTGGGACTTGGTGCAGGAAGGCGGGTTTTAGGTGATTCGTCCAAAGCCCAATCGCCGGGAATGCATGGGTTCAATTGTAATCTGTGCTAAAA
TACCATGTCCACCACCACCGCCGCCTCCATCACCATGATGGAGTGCCTATGCAATTGGAAGTTTCTGACAAAGAACAAATAGCTAGGTTAATACTTAAAG
TTTACAAGTCTAGTTTGAAGTTCAAGAATTGTCGAGGAAACACCAGCTAGCTAGGTTAATGCTAGTCATGCTAAATGCTGCCTGCTAATTGGCACAAGTA
TGTGAGTAATACTAATTTCACTCAAGTGAAATAAACATGTAATGCTATACTGTACTTCAAGCTCATCTATGTGTATGTGTTAAATAATTAAGAGATGAAT
TTGGTGAGCTGGGAAGCCTCTTCGGGTTTGTTTTATCAGGAGCTGCGAGGCTGTTATTGCGGAAATTGTTCGAACTTGGAAGTTGGAAGCATGTAATCTG
TACCGAGTTTTACAAGCCTTTTTCTTGTTATTATATATTAATTTTATCT