Detailed information on CNT30577864


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Oryza barthiiOryza sativa21.154.28100118reverse complement
CNT3016498Oryza barthiiZea mays43.7353.9892.21244reverse complement
CNT30682697Oryza barthiiTriticum urartu34.4124.1297.92192forward
CNT30595548Oryza barthiiOryza meridionalis43.55100100243reverse complement
CNT3054921Oryza barthiiAmborella trichopoda16.4926.2193.4892reverse complement
CNT3099603Oryza barthiiOryza rufipogon21.153.71100118forward
CNT30115707Oryza barthiiOryza nivara21.152.71100118reverse complement

Expression of CNT30577864

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSPTRPDFNYIFFRGQEGQKENQKDPFRVSISSFDII*

>peptide 2 (34 aa)
MLADPNRIFEEPDDEASKSDKDVSDATGLQLYFF*

Sequence

>CNT30577864
AAATTTGTCAAATGCTCGACAAGCCGCTAGATTAGCGGCGCATAAACCATGTTCGTCAACCAAGTTTGTTCAGTGGTCGTAACGTAATTGGTTAGTGGGG
AAAAACCGGGCCGGGACTCAAAAGAATTTGGCGAAGTGTTTGTTCCTGAACGAGGGAAGTGGAAAGACAAAGAGGGATAGGGAGCTCGCCTCCTTCTTTT
TTTGAATCGCCGAAATTGTACGACGACCCTTCTTGTTCCAGGCATACGACTCTGAGACGTGACGGTGTCACTTTTCCGGCCCGGTAAAGTGACAGTTATA
TAAATAAGAATAAGAAAGAGAAGCGTGATGTTGGCCGATCCTAACAGAATTTTTGAGGAGCCGGACGACGAAGCCTCAAAATCAGATAAAGATGTCTCCG
ACGCGACCGGACTTCAACTATATTTTTTTTAGGGGTCAGGAGGGACAAAAAGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGACATAA
TATAATAAATTTGGATAGATCTATTATAATCATTGGTTTATTTTTAGGATGGATGGAG