Detailed information on CNT30577832


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696509Oryza barthiiOryza sativa37.5836.0997.8227forward
CNT30522452Oryza barthiiSetaria italica41.0636.879.84248forward
CNT30555228Oryza barthiiOryza glaberrima49.544.3100299forward
CNT30110647Oryza barthiiOryza longistaminata37.5840.4698.24227forward
CNT30103788Oryza barthiiOryza rufipogon50.6672.5199.35306forward
CNT30551656Oryza barthiiOryza brachyantha39.2427.7887.34237forward

Expression of CNT30577832

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQSELSRSASRGTLKAPVPSSFPAALLSYSPLMFLHLIATW

>peptide 2 (68 aa)
MHDFDLKLLLCRQSDRGQDGMIKRPVRIIFITSLPEGSGRGAPAQASAWVAPASAPAWVAPASCGSGL*

>peptide 3 (51 aa)
MGSVSCRQWQQRCPSTLARSWMAPDQGMAHCWRCGAERCSRNCQGRRRGGR*

Sequence

>CNT30577832
GCCAGAACAGAACTGATTAAATATAAATAAATTATCTTACCATATATAACTGCATTTGATAGAGAAGAAATAGATACAAGTACAAATTAAAACTCCTGTC
GATGAAAGCTAATGCATGACTTTGATCTCAAACTGTTATTATGCAGACAATCTGACAGGGGGCAGGACGGCATGATCAAACGTCCAGTGCGGATAATATT
CATCACTTCTTTGCCGGAGGGCTCGGGAAGGGGTGCTCCGGCTCAGGCTTCGGCTTGGGTGGCTCCGGCTTCGGCTCCGGCTTGGGTGGCACCGGCTTCT
TGTGGAAGTGGTCTATGATCTTCTTCTTGATGGGACCGCAGATGGTCGCCGACGCGCACAACGCTGATGGGTAGTGTGTCTTGCCGGCAATGGCAACAAA
GGTGCCCTTCGACATTGGCACGATCTTGGATGGCTCCTGACCAGGGCATGGCTCATTGTTGGCGCTGTGGAGCTGAGCGATGCAGTCGGAACTGTCAAGG
TCGGCGTCGAGGGGGACGCTGAAAGCGCCAGTGCCATCGAGCTTTCCGGCAGCCTTGCTCTCGTACTCACCGTTGATGTTCTTGCACTTGATCGCCACTT
GGAG