Detailed information on CNT30577830


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696652Oryza barthiiOryza sativa43.356.998.51404forward
CNT30106877Oryza barthiiOryza longistaminata13.6130.3896.06127forward
CNT30103703Oryza barthiiOryza rufipogon38.6924.6699.17361forward

Expression of CNT30577830

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDLNCKIQKKKTMKKKNQKIKSEENDSYMDLSLLV*

>peptide 2 (32 aa)
MGHVKKSPNWAFHFRIISVWALVWIWATINRP*

>peptide 3 (42 aa)
RRERYRKERGSLPFLLAKVEATRWGFWLSTPSRRRNAVSLLR*

>peptide 4 (58 aa)
KREIQKGERKLTFSPRQGGGNEVGILAVDAVSPAKCRFLAPVTVPALMPTCSWYFLDL*

>peptide 5 (65 aa)
EERDTERREEAYLFSSPRWRQRGGDFGCRRRLAGEMPFPCSGDCSCFDAYVLLVFSGSVISIWCL*

Sequence

>CNT30577830
AGAAGAGAGAGATACAGAAAGGAGAGAGGAAGCTTACCTTTTCTCCTCGCCAAGGTGGAGGCAACGAGGTGGGGATTTTGGCTGTCGACGCCGTCTCGCC
GGCGAAATGCCGTTTCCTTGCTCCGGTGACTGTTCCTGCTTTGATGCCTACGTGCTCCTGGTATTTTCTGGATCTGTGATTTCGATTTGGTGTTTGTAGC
GGAGATCTGATGGTGGTATCTATGTGACTACATGGATCTAAATTGCAAGATTCAGAAGAAGAAAACGATGAAGAAGAAGAATCAGAAGATCAAATCAGAA
GAAAACGATTCCTACATGGATCTGAGTTTGCTTGTGTGACTTTGCTGTTTCCAGAATTGATATCTGATCACGTGCTTTTGTCAGCCATCTTCTTGGCAAA
CATGTTTTCTGATGGGTCACGTGAAGAAATCACCAAATTGGGCTTTTCACTTTAGAATCATTTCGGTTTGGGCTTTGGTTTGGATTTGGGCCACGATAAA
TAGGCCCTGAAAAATTGTCCATACTTTATTTTGCTGTTTGTATGGCCCATTTCTTTTTTTATATTTTTTTGCTGAAAAAAATGTGAGCTGTTAGATTGAA
ATCGTATGGTGACAAAATTTGACAGATTCTAGATGCTATTGTCTGTCGACAGGCTATAGACGGTCCCAAAAATAAAACGAATTGTCATAATAGGGGGTTT
CTAAAATATATGGGTTTTTTTTCAATGGAATATTTCAGTTTACTGCAACATTAAATCTATACATAGTGAAACATTATAAGTACACTAGGTGAAACATTTT
TGGTGAAACGAAAAAATAAACCAAATTCTCATAATAGAGGGGTTCTAAAATATATGTGTGATTTGTTGCAATAGCAGATAGGAGCAGATACACGGGAGGA
CAAGGCCTGCATGCAGCGTGGGGGAGGGGAGGG