Detailed information on CNT30577778


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007271, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695847Oryza barthiiOryza sativa95.6646.399.431058forward

Expression of CNT30577778

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIIARRLKEPTISASKSHPSTRAILALTHLH*

>peptide 2 (38 aa)
GKEKQEGMDLFFVPHKALGGSLRGWWFRYRVNEQTCTR*

>peptide 3 (48 aa)
MSKHVQDDGFLQEQQMLISEPLYIADVTIWSGSPGVAAHIYFYSSSES*

>peptide 4 (36 aa)
MNDNCKTVEGANHFSLKIPSINKSNFSTYSSTLVFN*

>peptide 5 (54 aa)
MGGIHSIPPWIGSPWGFNPKEPNIALGMPLTGQLALEKNYFLCNGIIHVSSIVL*

>peptide 6 (37 aa)
MRLLQYFFTEVNFIMLHFSLIQKYRFAIFFCYSKLPT*

>peptide 7 (32 aa)
RQGEAGGHGSVLCSSQGFGRKSERMVVQIQSE*

Sequence

>CNT30577778
CGGCAAGGAGAAGCAGGAGGGCATGGATCTGTTCTTTGTTCCTCACAAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAG
CAAACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTGGGAGTCCTGGT
GTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAG
TTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTA
ATGATTAATCAATGTGGTTTTCGCGTAATTGATGAGGTTACTGCAATATTTTTTTACTGAAGTGAATTTCATCATGTTGCACTTTTCACTTATACAAAAA
TATCGGTTTGCAATATTTTTTTGCTATTCTAAGCTGCCAACCTGAAAATCAATTTTGCTATTCTAAACTCAATGGACAGCGTGCAACGTTGAAGCAGGAA
AGCACCAGTACTCCTTCTGTTGTTGCTGTTGCCTATTGCTGCCTTGACACGGGATTTAAGCAGGCGCACAAAGCCAAAACCGAACAAACGTTTTGAAGAC
AGGGATTAGGACAATCAAGGGAATTCATCCCACAGGAATTAAGTGACATGGGAGGGATCCACTCAATCCCTCCCTGGATAGGTTCCCCTTGGGGGTTTAA
TCCCAAGGAACCGAACATAGCCTTAGGGATGCCATTAACAGGTCAGCTGGCTTTGGAGAAAAATTATTTTCTGTGCAATGGAATTATTCATGTTTCGTCG
ATTGTTCTGTAGGAAATTATACGGATGAATGATAATTGCAAGACGGTTGAAGGAGCCAACCATTTCAGCCTCAAAATCCCATCCATCAACAAGAGCAATT
TTAGCACTTACTCATCTACATTAGTCTTTAATTAATTTTATGTTTAATGGAATAGCTTAAATTTGTTATCATAGTATATATTTCTCCGGGAATTGGGATG
CATGGC