Detailed information on CNT30577776


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693051Oryza barthiiOryza sativa28.7115.9999.53213reverse complement
CNT30378671Oryza barthiiArabidopsis thaliana18.648.9497.83138reverse complement
CNT30300827Oryza barthiiTriticum aestivum23.0515.0497.08171reverse complement
CNT30554921Oryza barthiiOryza glaberrima47.5710099.43353forward
CNT30441777Oryza barthiiAegilops tauschii21.2928.0696.2158reverse complement
CNT3018289Oryza barthiiZea mays25.077.1794.09186reverse complement
CNT3068455Oryza barthiiLeersia perrieri12.428.498.9192reverse complement
CNT30683192Oryza barthiiTriticum urartu24.2617.7796.67180reverse complement
CNT30318721Oryza barthiiAsparagus officinalis7.2821.7788.8954forward
CNT30147990Oryza barthiiBrachypodium distachyon24.812.1592.93184reverse complement
CNT30117690Oryza barthiiOryza nivara15.535.8399.13115reverse complement
CNT3049694Oryza barthiiCucumis sativus8.8922.2292.4266reverse complement

Expression of CNT30577776

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTAILERRESTSLWGRFAKPYQPLTYEQQNLSLXGWY*

>peptide 2 (51 aa)
MFRELQSDITRIGTNKLRRCIFKGRKNILKGSSRNLFLGRLSEGSIHNRYS*

>peptide 3 (55 aa)
PASLIYYPTAMEAPLKTGFSDLPPDPGRSRIXKPTVWIPLVNFVVWIYNCRGWLG*

>peptide 4 (67 aa)
ACLSDLLSNCHGSTTEDWLLRPSTRSWAIPDXQADGMDSFGKFCCMDIQLSGLAWLTLVYSLYYTVK*

Sequence

>CNT30577776
GGCCTGCCTCTCTGATCTACTATCCAACTGCCATGGAAGCACCACTGAAGACTGGCTTCTCCGACCTTCCACCCGATCCTGGGCGATCCCGGATCNACAA
GCCGACGGTATGGATTCCTTTGGTAAATTTTGTTGTATGGATATACAACTGTCGGGGCTGGCTTGGTTGACATTGGTATATAGTCTATATTATACTGTTA
AATAACAAGCCTTCTATTATCTTTCTAGTTAATACGTGTGCTTAGGAGTCCTTGCAATTTGAATAAACCAAGATCTTACCATGACTGCAATTTTAGAGAG
ACGCGAAAGTACAAGCCTGTGGGGTCGCTTCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAANGGGATGGTACTGACTTTCA
TACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAGCGACTTGGACCGAACCGGGGATTTTATGTTC
CTACACGGCCCNAGAATCCAATGTTTCGAGAGTTGCAATCCGACATTACAAGAATTGGGACCAACAAACTAAGGAGATGCATTTTCAAGGGCAGAAAGAA
TATCCTTAAAGGGTCATCTCGCAATCTTTTTCTAGGTCGGTTGAGTGAGGGCTCCATCCATAACAGATATAGCTAGCAGCCTGTAGCTTTCCCCACTCCC
CCCTCGTCGAGTGGTGCTTGTTTGGGGCCACCTGAAATCGGG