Detailed information on CNT30577742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696231Oryza barthiiOryza sativa37.6833.8894.19826forward
CNT30554856Oryza barthiiOryza glaberrima47.7668.161001047forward
CNT30370995Oryza barthiiOryza glumipatula45.2664.8499.29992forward
CNT30106300Oryza barthiiOryza longistaminata34.35101.6293.63753forward
CNT30103291Oryza barthiiOryza rufipogon41.6527.9993.98913forward

Expression of CNT30577742

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MYVVWRKHHYWCGDGVMKCMTESFNYFICPKKERYIYLVYYCCTYLLLNGILNNMIHFVVHVLLHHLLMCRW*

>peptide 2 (89 aa)
MAVRPSIRPSISPAVVSVACVQVLQRGRHGSVPNQSLILSRSSDSDVLRRLLLWNRRLLLLLTRMDLSLRRLLFLVSFSLPCLCLPRII*

>peptide 3 (46 aa)
MTSCLFLLKNFDTLIYHKCQQRILLWAAQKSLPVLLRQFILQSVIC*

>peptide 4 (40 aa)
MLCHRVDPRLDRGGRRRDGVSWMDGRMWGRREPMAVAAAG*

>peptide 5 (43 aa)
MSSEETKPKISLILSCFLFFFPFASCFPPPRSIDLMVMVLVVG*

>peptide 6 (38 aa)
MPTKNSSLGCPEIIASFITTIHSPVCNLLILHCGILSM*

>peptide 7 (39 aa)
MPRKRCALNIKHHVQRKGTCYVPSLNLERLLIFSKVVVF*

Sequence

>CNT30577742
TTTAGATATATGACTATTCGTCGATCAACCGTTGGTTCACTTGCCGTCAACTACACATAGGAGAGGATATTCCAGCCGCAACTCCTATCGCGAAAGATGA
GCAGAATCTCATCCTCACTAGCCACATTCCTCCCCCAACCCTAACCACCATAGGCATACGGTATTGCGCAGGCATGAACAATCACCCCCTAATCCTCTCT
ATTTAAGGCCGGCGCCACCGGAACGGTTTGAGGAAGAAGAAGACGAGACCTCCCCAGATCTGGCCTCTTCTTGGCTCCTTCCGCCATAGTCGTACTTGTT
TGACAGGGTGGTCGTCTTCCTCTCTCTCTCTGATGCTTTGTCACCGTGTTGATCCGCGATTGGATCGCGGTGGTCGACGACGGGATGGTGTGTCGTGGAT
GGATGGACGGATGTGGGGGCGACGAGAACCGATGGCGGTGGCCGCGGCTGGCTGACAGAAGAGAGTGAGCACACAGCGGGCAGACTGCATCTGAAATAAA
CTGGTGACGACGAAGAAGACGACGGACGCAGCTTGCCGTTGCGTGCTCACTTCTCTCTCTGTCAGCTCTCTCTGATCTCTCTCGCCCCCCGCCTCGGGAC
TTGCTCCGCCATGGCTGTCCGTCCATCCATCCGTCCATCCATCTCCCCTGCCGTTGTTTCCGTCGCGTGTGTGCAGGTGCTGCAGCGAGGACGGCATGGC
TCGGTTCCCAATCAGAGCCTTATCTTGTCCCGGAGCTCGGATTCCGATGTGCTGAGGCGGCTGCTTCTTTGGAACAGGCGGCTACTACTGCTGCTGACAC
GCATGGATTTATCTTTGCGCCGCTTGCTTTTCTTGGTGAGCTTCTCGTTGCCATGTTTGTGCCTTCCAAGGATTATTTAGTGGGGGAGTAGTAGTAGCAA
CTGCTCTTGGGGAAGACGACGCGTGGTTGTTTGGTTTTGATTAATACGGATCTTTGCTCGCCGCCCCAGGATGTCTAGCGAGGAAACCAAGCCGAAAATC
TCGCTAATTTTGAGCTGTTTTCTTTTTTTTTTTCCTTTCGCTTCTTGCTTTCCTCCTCCTCGATCGATCGATCTCATGGTGATGGTTCTTGTGGTGGGTT
AGGTAGGAGGAGACTGACGCCATGGCTGCTGCAGAGGGGAGCAGATCTCTGCACCTACCGCCATAGCTATCGCCTTCAAGATCTGGAAAACCTCCATATC
TCTCCGGTGACAGGTGTTCTATATCGTCAGTAGCGATTGTATAGTGGCTGGAAGACAAAGAAAGCTCTCTGCGCATTGCTTGTTGTATATATATGTTAGG
ATTTTGGAAAGGTGCGACTGTAAGAGTGCTATGATCCTGTGTGGTGCCTGCAACTGATGTTGTGTGTCATTCAGCAATCCTACTTCTGCATCAATTGTTT
TCAAGTTCAATTTTAGGATGGTAGACCATTAGTGTGGCCGCCAAAAGATATTGGCTACCTATCTGTATAATTTAATCTGAGATGTAAAATGGAAAGAAAT
AATTGACCAAATAGAAACGCCAGCAAAGCTAAGTTTATTAGTAGGAACTTGTTGCCATGCCTAGGAAAAGATGTGCACTGAACATTAAGCATCATGTACA
AAGAAAAGGGACATGTTACGTGCCTAGTTTAAACTTAGAACGACTGCTCATTTTCTCAAAAGTTGTTGTATTCTAGACTTCTGGTAGTGCCCTAAAACAG
AACTAGTGAAACATATGCTTGTTAAACATATTAGTTTGAAGCCAATTACTAATGTATGTCGTGTGGAGGAAGCACCATTATTGGTGTGGTGATGGCGTCA
TGAAATGCATGACTGAAAGTTTTAATTACTTCATTTGTCCCAAAAAAGAAAGATACATATATCTTGTTTATTACTGTTGCACGTATCTGTTATTGAATGG
AATTCTGAATAACATGATCCACTTTGTTGTACATGTCTTACTACATCATCTCTTGATGTGTCGATGGTGAATCTGGCAAGTAAAACAACCTGGTATTTAT
GACTTCATGTTTGTTTCTCTTGAAGAATTTTGACACGTTGATATACCATAAATGCCAACAAAGAATTCTTCTCTGGGCTGCCCAGAAATCATTGCCAGTT
TTATTACGACAATTCATTCTCCAGTCTGTAATCTGTTAATTTTACACTGTGGAATCCTCTCCATGTAAATTTTGGACATGACTGTATTTATC