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Detailed information on CNT30577721

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007200, E-value = 1e-109

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30369441	Oryza barthii	Oryza glumipatula	100.51	92.39	93.78	595	forward
CNT30107513	Oryza barthii	Oryza longistaminata	99.83	91.49	95.6	591	forward
CNT3099965	Oryza barthii	Oryza rufipogon	100.51	88.02	94.12	595	forward

Expression of CNT30577721

Peptides detected in this lncRNA

>peptide 1 (48 aa)
FLQAELLAHFFPSNLLQTLEIHPCMSHYNNLKYPSLPSIQISCTCMDS*

>peptide 2 (40 aa)
MQDFRAKNSCNSSLSTPTITTPISLGLLRFREFGVRGARL*

>peptide 3 (32 aa)
MSYVSCVVIALPRAARAMSDLLQLGSCPVGLP*

Sequence

>CNT30577721
TTTCTTGCAAGCTGAGCTCCTAGCTCACTTCTTCCCATCAAATCTCCTCCAAACACTTGAGATCCATCCGTGCATGTCACACTACAACAATCTCAAGTAT
CCAAGCCTCCCATCCATCCAAATATCTTGCACATGCATGGATTCATGAGGGAGATCGGGAAGAAAACAGGTGGAGCTTGCTGCTGGTTGCAGCAGTAAAA
CAACCATGTTTTTCCTCCACTTGGTCATTGATGCAAGATTTTAGAGCAAAGAACAGCTGCAACTCGTCTCTCTCCACTCCGACGATTACAACCCCTATCT
CCCTCGGTTTACTCAGATTCAGAGAATTCGGAGTACGTGGAGCAAGACTCTGAGGTTGAGTGTGTTTCCACGCAGCAGCAAGGAGAGGATTCCGGTTATG
AGTTATGTTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCCCGGTTGGTTTACCGTAGTAGG
GTTGTGGCATCACCGGTTTTATCTTTGGCCTATGAACTCTAATTGAGACTTCCGCTGCTATATTTATGTGTTGTATGTTGGGACCTCGGACC