Detailed information on CNT30577717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695827Oryza barthiiOryza sativa96.6298.5999.361257forward
CNT30110877Oryza barthiiOryza longistaminata9788.1997.311262forward

Expression of CNT30577717

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MESGGVPSPIFNFPSPASFLPCRLLLAMVESVPLSR*

>peptide 2 (36 aa)
MXQERESATTLFVKNRLDVNSCIYIFLSIGFSSNGL*

>peptide 3 (82 aa)
GYFYFFCTSLVSDFCGSGNGWPVCGGDGGLQEGGSGVLDLFSLAAAVRSQWIWWICRWSQVECRRRSSTSPLPRVSSHVGFC*

>peptide 4 (43 aa)
MVMRRKQLFRIPAVLPFFICILVMFLICYSAQIQILGCSCRLS*

>peptide 5 (42 aa)
VISIFFAPALYPIFVDLGTAGQCAVVMAGYRKEAAASWICSR*

Sequence

>CNT30577717
CGGTTATTTCTATTTTTTTTGCACCAGCCTTGTATCCGATTTTTGTGGATCTGGGAACGGCTGGCCAGTGTGCGGTGGTGATGGCGGGCTACAGGAAGGA
GGCAGCGGCGTCCTGGATCTGTTCTCGCTAGCGGCAGCGGTGAGGAGTCAGTGGATCTGGTGGATTTGTCGATGGAGTCAGGTGGAGTGCCGTCGCCGAT
CTTCAACTTCCCCTCTCCCGCGAGTTTCCTCCCATGTCGGCTTCTGCTAGCCATGGTAGAATCGGTGCCGCTATCGAGATGAGCCAGATCCGGCATCTAC
CTTCCACAGTTCCCCACTGAGAACAGGATGCAGACACAAGTTGAATGATTAGACCCCAAGAGAGACTAATTTCTTTGATGCTCTTAGATGTCATCGGTTT
GTGTCCCATGCATGTACGGCTGTAGTGGCCGTTTTCCAAATTAGATACGGATTTGATCCTTTTCCAACAGATCCTCACAGGTGGCTCAACACAGCTGGCA
GCGGCGGGGTCGACGACACAGATCGAGCACCTTCCATCCACACCAATCCGACGACATCGGCTGCAGCTAGGTTCAGTTCATAAATTGTGTGTTATTAATC
AGCGATATTTGCATCTTTTTAGCCTGAAGCATCCCAATTACATTTTCTACATCTTTCAGTTAACAACACTCTAATTTTTTTCGGGTGCCCTTTTTTTGGT
ATTGGAATCCATGTTCTTTTCTAAAAGTGTGGCACGTTTTGTTCTTTGATGCGCGATGGTGATGAGAAGAAAGCAGCTGTTTAGAATCCCTGCAGTTCTG
CCATTTTTCATTTGCATTCTCGTGATGTTTTTGATCTGTTATTCAGCTCAAATACAAATACTTGGCTGCAGTTGTAGGCTCTCCTAATTTTGATTTGGTC
CTCTGAATTTGATTGCTATGGTAATGGCAGCTGCTACTCTGTCACCGGATGGATTGAGGAGCACCNGAGCTGAGGTTTATGNTTGATTANACTTAACCCT
TTCGTGATTCTCCAACTAAATATGAAAATTGTACTGGTTGGAGGATTTGAGAAGATGCTGCAATCTTCAGCACGAGGAATTTCTATAGCATGAANCAAGA
GAGAGAAAGTGCGACGACATTGTTTGTGAAAAATAGACTTGATGTTAACTCCTGTATATATATATTTCTTTCAATTGGCTTTTCTTCAAATGGATTGTAA
GAAGCATGAACACTGAAACAGAGGTACTGTAGTTTAGTAAGATTTTGCTCTAATATGTAATAGTGACTTGGTTACTAAGACAAATTTTGTGACAAGATTA
A