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Detailed information on CNT30577701


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618776Oryza barthiiSesamum indicum21.747.7588.75160forward
CNT30255597Oryza barthiiAvena sativa22.2818.7996.95164reverse complement
CNT30231730Oryza barthiiAnanas comosus19.5751.899.31144forward
CNT30627396Oryza barthiiDaucus carota20.1135.2493.24148forward
CNT30679583Oryza barthiiTriticum urartu33.565.398.38247forward

Expression of CNT30577701

Peptides detected in this lncRNA

>peptide 1 (44 aa)
ETQFRTAAESSDLSTSRIRGISVFELRWGKSTKARQIDRLLSRC*

>peptide 2 (36 aa)
KLNSALLLSRRTYPPQGFVEFPFLNCVGGNLPKLGR*

>peptide 3 (29 aa)
MIVFFTSALFFAGTKSPLTTNLQTSSSGW*

Sequence

>CNT30577701
AGAAACTCAATTCCGCACTGCTGCTGAGTCGTCGGACTTATCCACCTCAAGGATTCGTGGAATTTCCGTTTTTGAATTGCGTTGGGGGAAATCTACCAAA
GCTAGGCAGATAGATAGACTCCTTTCCCGCTGCTAAGGGAGAGCAAGAAACTAAATCAAATGATTGTTTTTTTCACCAGCGCCCTTTTTTTTGCGGGTAC
TAAGAGTCCTCTCACTACCAACCTGCAGACATCATCATCTGGCTGGTGACATTGGAACGTGCTTATGTGACTTCAGTAAGGAAAGAAATGAAAGGGTGTG
TGTGATTGATTCCCAAAAGTAGTAGTTCTTTGTTCCTTTCGTCGATGAAAGTACAACCACCCATTTTCCACACTTTTTCATTTCCTTGAAAGGAAAGAGG
AATCTGTGTACTCAGAGAGAAGGTAATTGGAAAAACGATTCATTCCTTTGCTTTCTTTCAGATATATATTCAATAAGATGATCTGACCTTACCTGAAAAC
TAGATTCATGAAGAAGCCCAAAAAGTGCCGGGCTTAGTGCAGCCCAGTTCCTAGCCACAGCTCGGGAAAAAAAGAAAGAAGTATCTAACTAGAGCTCGCT
CCTTTAGTATTTAATAGGGAAATTCCCACCGAAAAAGCCATGAAATCACTAGGACATAACCTCCGAGACTATGAAGAGAATAGAACCATATCGAGGTCCT
AATTGTACAGCTTTTGTATGATGCCCTTCCAACGTG