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Detailed information on CNT30577688


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696173Oryza barthiiOryza sativa69.9454.398.64442forward
CNT30554920Oryza barthiiOryza glaberrima66.4656.9998.1420forward

Expression of CNT30577688

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MAWTKKPNMENMARRXFLISFTLSSANASGSSARSSGKTQPSAPSMAHRQR*

Sequence

>CNT30577688
TAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCATCATCTTCTTAGTG
TACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATT
AACCACTGCTAAGCTACGGTGCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGC
CTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCNTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGAGC
TCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCT
TGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTG
TGAGAGCTGAGAGAGATGGCGATGAGCGAGCG