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Detailed information on CNT30577673


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641314Oryza barthiiNymphaea colorata27.411786.31168forward
CNT30170287Oryza barthiiPistacia vera23.8215.6581.51146forward
CNT30441454Oryza barthiiAegilops tauschii21.2117.8383.08130forward

Expression of CNT30577673

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MSSSSRKVDLGFLATDLAGFSVICPSCLLSSVICSKPNTDTLAGVSDFSCPFAPGTLADPPVLILPLALCRSSSRSIMLDKLCSQ

>peptide 2 (39 aa)
MFQAKHGHPCWGLGFQLPICPRDAGGSPCTDSSSCALPI*

Sequence

>CNT30577673
AAGGCAGTTATTTGAATCAGTCTCCAACATACTTCAAATCATAGACCACACCATACAGCAAACATAGTATAAACATTGTCATAGAGAGTACAGCTGATAG
CAGCTTGTAATATTCTAGCATTACTTTGGTAGCATCCCTCTACAAAACATAGCAGACATCACCAGCTCTTCATCTTGGCCATACACATTCAACCTGACAA
GAAAACCATATCCCATTTTACAACATATGTAATCTGTACATGAAAATGTATCTACAAGAAATCAAAATAGTAGGTAGTGTGGAGTGCCTTACATGGTTTG
CTAGTGACAGACCACACTGACCAGAACATTTCGTCTCCTCAGTAGGCACCAGCTGCCATGAGCAGCTCATCAAGGAAAGTTGACCTTGGCTTTCTTGCCA
CGGATCTTGCGGGCTTCAGCGTCATATGCCCTAGCTGCCTCCTCAGCAGTGTTATATGTTCCAAGCCAAACACGGACACCCTTGCTGGGGTCTCGGATTT
CAGCTGCCCATTTGCCCCAGGGACGCTGGCGGATCCCCCTGTACTGATTCTTCCTCTTGCGCTTTGCCGATCTAGCAGTAGGTCCATCATGTTGGACAAG
CTTTGTAGTCAAC