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Detailed information on CNT30577669

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695933	Oryza barthii	Oryza sativa	50.69	48.57	98.74	476	forward
CNT30673431	Oryza barthii	Setaria viridis	20.45	57.66	95.31	192	forward
CNT30554984	Oryza barthii	Oryza glaberrima	66.88	55.87	99.52	628	forward
CNT30345519	Oryza barthii	Eragrostis tef	21.94	35.52	94.66	206	forward
CNT30371011	Oryza barthii	Oryza glumipatula	60.92	88	98.43	572	forward
CNT30108138	Oryza barthii	Oryza longistaminata	66.88	77.53	98.41	628	forward
CNT30149001	Oryza barthii	Brachypodium distachyon	20.87	47.46	93.37	196	forward
CNT30103422	Oryza barthii	Oryza rufipogon	73.8	53.43	98.85	693	forward
CNT30117588	Oryza barthii	Oryza nivara	69.97	54.43	98.78	657	forward

Expression of CNT30577669

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

>peptide 2 (51 aa)
MAWTKKPNMENMARRXFLISFTLSSANASGSSARSSGKTQPSAPSMAHRQR*

Sequence

>CNT30577669
AGCGGTAGACTCATTTTATTGTGCGCTTCGGATTTTTTTTAAGACCAAACGCTTTGGATTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATT
CGACCCAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAG
AAATGGTTATATTTTGGGATCGAGGGAGTATTTGTTTCTGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCA
TTAGTTGGGAAACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCATCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACT
AAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGCCCCACTTCACTTGC
CGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGC
CTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCNTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGAGC
TCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCT
TGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGA
GAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTT